Halomonas sp. XH26: J4377_07595
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Entry
J4377_07595 CDS
T10290
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4377_07595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_07595 (mfd)
Enzymes [BR:
haxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4377_07595 (mfd)
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4377_07595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UTA81317
LinkDB
All DBs
Position
complement(1648462..1651911)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSSFSLLEPPQPKGIRDTLYLTAPPGSATALALAQVALSAPLLVITPNTASAQRLEQDLA
FYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGIVLVPINTLMQRLPPV
SYIAGRVMTLKAGAKLNRETFRESLSRAGYRAVETVYEPGEYAMRGAIIDLFAMGMDEPI
RIDLFDDEIDTLRHFDPGNQRSTNKVDVIELLPAHEYSLSRSAIACFREQFETLFDVDPR
QCPLYNDALKAIPSPGLEQYLPLFFDETASLFEHVTDDTRVALLPSVFEAAEQHWQSIES
RYENLGVDPTRPLLPPLRAFIPVNDVFSAIKARPRIELTEDNTQRHALAPKAQALPSLAI
NARAKHPLNELATFLDAQQATRVLFVAESRGRREALEEVLAPLKLNLPHIDSFQDFLSST
DRIAITESLVGSGLWLTEPNVVVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHLISRYSGADDELA
PLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDTPGDEYVRFSASFPFE
ETPDQQAAIEAVISDMISPQPMDRVVCGDVGFGKTEVAMRAAFLAVQTGRQVVVLVPTTL
LARQHFENFRDRFADTAVNISLISRFTGGKEMTQTLESIKNGQTDIVIGTHKLLSKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDSSVIKEALLREILRGGQVYFLHNEVKTIENAAEQIRELVPEARVAV
AHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEISLNLPALIPDDYIHDV
QQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTRLRHRAEKLGVARIEA
GENRGRVLFNGSTQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPMETTEQRFDKVEALLT
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctttttctctgctcgaaccgccccaacccaaagggattcgcgacacgctctac
ctaacagcgccgccgggcagtgcaactgccctggcgctggctcaggtcgcgttaagcgca
ccattattggttattacgccgaacactgccagcgcacagcgcctggagcaggatctggca
ttctatagcaatgttcccgttctaccctttccagactgggaaacactgccttatgacagc
ttctccccgcaccaggatattatctcgtcacgcctgcgtacgctgcgcttactgcaggat
ggcgtacgcggcattgtgctggtgccaatcaatacgctgatgcagcgtctgcctcccgta
tcatacatcgctgggcgcgtgatgacgctaaaagcgggcgccaagctaaatcgggaaaca
tttcgcgaatcgctatcgcgggcaggttatcgtgccgtagaaacggtctacgagcctggc
gaatacgccatgcgcggcgcaattatcgaccttttcgccatgggtatggatgagccaatt
cgtatcgatttgtttgatgacgaaatcgatacgctacgccattttgaccctggcaatcag
cgctctaccaataaagtcgatgtgattgagctactcccagctcatgagtattcactcagt
cgcagcgctattgcttgcttccgagaacagtttgaaacgctttttgatgttgatccgcgc
cagtgccctctctataacgatgcactgaaagccatcccctccccgggcttggaacaatat
ttgccactgttcttcgacgaaaccgcttctttatttgagcacgttaccgatgacacccgt
gtagcactgttgcctagtgtattcgaagcagctgagcaacactggcagtccattgaatca
cgctacgagaatttgggtgttgatccaacacgcccccttttaccaccgcttcgcgcgttc
attcccgttaatgacgttttttcggcgataaaagcccgcccccgaatcgaactaaccgaa
gacaacacgcaacgccatgccctggcgccgaaggcccaagcactaccctcgctggcaatt
aacgctcgcgccaaacaccctcttaacgaactggctacctttctggatgcacagcaagct
acacgggtactgtttgttgccgagtcacggggacgcagagaagcgttagaagaagtactg
gcgccgcttaaattaaacctgccccatattgacagcttccaagactttttaagcagcact
gatcgcattgccattactgaaagcttggtaggcagcggcttgtggcttaccgaaccgaat
gtcgtggtgatcagcgagactgagctctttggcgatgtcgtgcgccagagtcggcggcga
gaaaaagcgaccgacgacaacgaattggccgtgcgccatttatctgagttacgagaaggc
gcaccggttgttcaccaagcacatggcgtcggccgctacttggggctggaaacccttgaa
gctggcggtcaagctaacgaattcctggcgctttcatatgccgacggtgccaagctttat
gtcccggtcgatagcctgcatcttatttctcgctatagcggcgctgatgacgaactcgct
ccgctgcatcggttaggctcagatcagtgggaaaaggcacgacgtaaagcggctgagaaa
atccgcgacactgccgctgagctactcgatatctacgcccggcgggaggctcaggaaggg
ttcatttatgatacgccgggcgatgaatacgttcgcttctctgccagcttcccgtttgaa
gaaacccctgaccagcaggcagccattgaagcggtaataagcgacatgatctctcctcag
ccaatggatcgcgtcgtttgtggcgatgtagggtttggcaagaccgaagtcgccatgcgt
gctgcattcctagccgttcagactggtcgccaagtagtggtgcttgtgcccactacgcta
ttagctcgccagcactttgaaaacttccgcgaccgctttgccgacaccgctgtgaatatt
agccttatttcacgcttcacaggcggcaaggaaatgacgcaaaccttggaaagcatcaaa
aatggccaaaccgacattgtaatcggtactcataaactgctatctaaaagcgttgagctg
cccaaaatggggcttttaattatcgacgaagagcaccgctttggggtcgcgcagaaagag
aaactcaaaacgctgcgcgccgaaatcgacattctgacgctaacggcaacaccgattccg
cgcaccttgaacatggccatgagcggcatccgagacctttcgattattgccaccccgcca
gcacggcgcttatcggtcaaaacgtttgtgcaacagcgagatagcagcgtcattaaagaa
gccctgctgcgtgaaatattacgcggcggacaagtctactttttgcacaatgaagtcaaa
acgattgaaaacgctgccgaacaaatccgcgaactggtgccagaggcacgggttgctgtc
gctcacggccaattacccgagcgcagccttgagcgagtcatgtcagacttctaccatcgt
cgcttcaatgtgctggtgtgctctaccattatcgaaaccggcattgacgtgcccagcgcc
aacacgattctaattgagcgcgccgataagttcggcttggcccagctacaccaactgcgt
ggccgtgttggacgcagccaccaccaagcatacgcttacctactaacgccgccccccaag
gcaatgacacgagatgccgtgaaacgtctggaagcgattagcgcctctgatgatctcggt
gctggcttcaccttagcaagccacgacatggagatacgtggcgcaggcgagcttctaggc
gacgagcagagcggccaaatggaaaccatcggctacacgctttacatggaaatgctggat
cgcgcggtgaaggctatccgtgcgggcaaaacgcctaacattgacgcccccttcaacacc
ggtgtcgagattagcctcaatctgccggcgctgattcctgacgactatattcacgacgta
cagcagcgcctggtgatgtataaacgtatcgccaatacccagagcgacgctgagcttaag
gagctacaagtcgagcttattgatcgctttgggctccttcctcagcccttgaagaacctg
atacgtcagactaggcttcgccaccgcgctgaaaaactgggtgtagcgcgcattgaagcc
ggtgagaaccgtggacgagtgcttttcaacggctctacccaggtcgatccgttaaccctt
gtgacgctcattcaaaaatcgccacagcactaccgactggatggctcagacactttacga
tttgaattcccaatggaaaccaccgaacagcgttttgataaagtcgaagctctgcttaca
acactcaatcaaaaagtagcggcggcgtga
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