Halomonas sp. XH26: J4377_10640
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Entry
J4377_10640 CDS
T10290
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03018
RNA degradation
Brite
Enzymes [BR:
haxh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J4377_10640 (rne)
Messenger RNA biogenesis [BR:
haxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4377_10640 (rne)
Ribosome biogenesis [BR:
haxh03009
]
Prokaryotic type
rRNA processing factors
J4377_10640 (rne)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UTA78436
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Position
2293222..2296686
Genome browser
AA seq
1154 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDDDESLTLSSFELSTDTEVGKEPDPSFTPPAMRAEAAVKSVVHNAPAPAS
LQTEEKAERAAKADKAVTATPPSTEEQPSVIGRFIRGFAKLLGGEDTSTSQPEPEAPVAR
KQPERTSKNRSQRSESKPKPARERGESASRNEQRSQQQSSNQQPSNPQPSQPRNADNNDD
ANDKRSGPSRTRNRRRHPQQDDAKLQDNDQKSSRQKEQQTNLAAKESPKDEAAKPTAQPE
NRRDKPRDAKPKNEVTRESASQTDDKQDDGKPKRTRNNPRNRTRKQAVNPQAEAEQLKLQ
AAAAEAPSADAPSAEAAVESPAVEAPAVEAPAVEVNSSKAAPASPSLQDGASTTAAPTAE
AVTEAPEPAVEESAAADGTTAERPAEKAEKARKATRQRRQPQQAAEKAEPEAEERVEKSA
EAKPQQPTDDATAAQEAPQEAASGSSEVVKADAGVELEEESSSNVKEFDTANSESVSSRG
EETAKETDKPQQSASQAAESQEPSESQEPASQEPQETAQETSADANTHAEAPKAAETAET
AETADSDANTQTLSQSVAASIEASSPEFAEQPEAPSLDSDAVSNTTASDTTAASETANNS
AAAQEGTEQPTLATNEEVQTPSPEAPVETVAPEEAKQAPAASTQDEAPKPRRRRRRAHND
PRELRKQAQNTTNE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgcaacccagccagaagagctgcgggttgcgctggtagac
gggcaacgcctttacgatttagacatcgaatctggcgctcgagaacagaagaaagccaat
atttaccggggtaaaatcacccgggtagaaccctcccttgaagccgcttttgttgatttt
ggcgccgaacgccacggtttcctgccactaaaagaaatttcccgcgaatattttatcaaa
gatgtgtctggtcgccccagcatcaaagaggtgctgaaagagggccaggaagtcatcgtc
caagttgataaagaagagcgtggcaataaaggggcagcactgactacctttatcagctta
gcgggccgttttctcgttctgatgccgaacaatccccgtgcaggcggcatttcacgccgc
attgaaggtgatgaccgcagccagttgaaagatgccatgggccaactgacagtgccagac
aaaatgggcctgatcgttcgcaccgccggtatcggccgtagcccagaagagctgcagtgg
gacttggattacctcgtccaagtgtgggagtccattaccactgaagctggcaagcgctca
gccccattcctgatttatcgcgagtctaatgtcattatccgcgccatgcgcgattatcta
cgccaagacattggcgaggtgttaattgacagccccgagattcatgcagaagcactgggc
tttattcgtcaggtaatgccctcttaccagcagaaaattaaactctacgccgatgaagtt
ccgcttttctcgcgtttccaaattgagtcgcaaatcgaaactgcttaccagcgcgaagta
aaacttccttctggtggctccattgttatcgatcacaccgaagcgctggtctctattgat
atcaactctgcccgggctacacgtggcagcgatattgaagaaaccgcgctgcaaaccaac
tctgaagcagccgatgagattgctcgacagttgcgcctgcgtgatatcggtggcctcgtc
gttatcgactttatcgatatgggccctgcgcgcaatcagcgcgaggttgaaaatcgcatg
cgcgatgccctgaagctggatcgtgctcgcgttcagattggtcggatttctcgctttggc
ttaatggaaatgtcacgtcagcggctgcgcccctcgctaggcgaaaccagcggtgttgtt
tgtccgcgctgtaacggccaaggcactattcgcgatgttcgctcgctttcgctctctatc
atgcgcctgattgaagaagaagctatgaaagagcgcagcgcacaaatccgcgccattctt
ccagtacctgtcgcgacctacctactgaatgaaaagcgcagcgttctagcagacatcgaa
tcacgtcaaggcgtacgcgtagttctactgccgaatcccgaaatggatacgccgcattac
gacgttcagcgactacgtgatgaccacctagacgatgatgaaagcctgacgctatccagc
ttcgagctttcgactgatactgaagtaggtaaagaacccgatcctagcttcactccgccc
gccatgcgtgctgaagcagcggttaaaagcgtggtacataacgcaccagcgcccgcctct
cttcagactgaagagaaggcagagagagctgccaaagcagataaagccgttacagcgact
cccccctccactgaagagcaacccagtgtgattggccgctttatcagaggcttcgccaaa
ctgctaggcggtgaagataccagcacgagccagcctgaaccggaagctcctgttgcccgc
aagcagcctgagagaacgagcaaaaatcgctcacaacgcagcgaaagcaagccaaagcct
gcccgtgaacgtggcgaaagcgccagcagaaacgagcagcgcagtcagcagcaatcgagc
aatcaacagccgagtaacccgcagcctagccaaccgcgcaacgctgataataacgacgac
gctaacgataaacgtagcggtcctagtcgtactcgcaaccgtcgacgccaccctcagcaa
gacgatgccaagctccaggacaatgatcaaaagagcagtcgtcaaaaagagcagcagaca
aacctagcggctaaagagtcacctaaagatgaggcggctaaacctactgctcaaccagaa
aatcgtcgcgacaaaccacgtgatgccaagccgaaaaacgaagttacccgtgagtctgca
tcacaaacggacgacaaacaggatgacggcaagccgaaacgcacgcgtaacaatccgcgc
aaccgcacgcgtaaacaggccgttaatcctcaagccgaagcggaacagctgaaactgcaa
gccgcagcggctgaagctccctctgcagacgctccttctgctgaggctgctgttgaatca
cctgctgttgaagcgcctgctgttgaagcgcctgctgttgaagtgaacagcagtaaagca
gcgccggccagcccctctttacaagatggggccagcacaacagctgcaccaaccgccgaa
gcagtgactgaagcgcctgaaccagctgtagaggaatcagcagctgccgatggaacaacg
gctgagcgccctgccgaaaaggcggagaaagcacgcaaggctacgcgccagcgtcgccaa
cctcagcaagcggcagagaaagcggaacctgaagcagaggaacgtgtagagaaaagcgct
gaggccaaacctcaacagccaactgatgacgcaactgctgctcaagaagcgccccaagag
gcggctagcggttcgtctgaggttgtgaaagctgatgcgggagtagagctggaggaagag
agtagttcaaacgtgaaagagtttgataccgccaacagcgaatcagtaagctcacgtggc
gaagaaactgcaaaagagactgacaagccccagcagtcggcatctcaagctgctgagtct
caagaaccttctgagtctcaagaacctgcgtctcaagaaccgcaggagacggcacaagag
acatccgcagacgccaacacacatgcagaagcgccgaaagctgctgagactgctgagact
gctgagactgccgacagtgacgctaacactcagacactctcgcaaagcgtagcagctagc
attgaagcaagctcaccagagtttgctgaacagccggaagcaccttctttagacagtgac
gcagtgagcaatacaactgcttcagacacgacagctgcttcagaaaccgcgaataacagc
gctgctgctcaagaaggcacagagcagcctacattggcgactaatgaagaggttcaaacg
ccctcaccagaggcccccgttgaaacagtggcacctgaagaagcaaagcaagcgcctgct
gcttctacccaagacgaggcacctaagccacgtcgccgccgtcgtcgcgctcataacgat
cctcgtgaactgcgcaaacaagcacagaacacgactaatgagtga
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