Halomonas sp. XH26: J4377_12620
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Entry
J4377_12620 CDS
T10290
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J4377_12620 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_12620 (recB)
Enzymes [BR:
haxh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J4377_12620 (recB)
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J4377_12620 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
DUF4398
Motif
Other DBs
NCBI-ProteinID:
UTA78800
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All DBs
Position
2767633..2771466
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AA seq
1277 aa
AA seq
DB search
MSQPAPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSEDHSAFVRPLTPPE
ILVVTFTNAATQELRERIRHRLVEAAAVFRATDDTGSDSLLLQLREQYAEATWPACARRL
ELAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQRELEQEVVRDYWRTFYYP
LDADALGSITRYWKSPDKLHEDVRKLLHESDALGSQRPAPADTLSAAEAERSATLSTLKA
PWHAWLDELVPAMEEAAKRKAFKGQSFNAKSRASWLGALREWCESDLERPALTPAAWKRL
TPDGMAEIWKEGAPPCPAAWEALADMPAALNALPEPRNDLLIHAVQWCKVRMEREQERRA
EMGPNDLLTHLDRALQGPNKDALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYDVANPR
RDAAMLLIGDPKQAIYAFRGADIFTYLQARQDTAGRHVTLGTNFRSSRAMVEAVNHCFHY
ADQHSAGAFLFREEGGENPLPFLSVDAKGRDEQLVHQGKPLPAMTLWPLTSEEPLSKTAY
QTEMAERCASYMVELLAAGQSGNKQGKSGFQKGDDLSPLKPSDMAVLVNGLQEARAIRLA
LASRGVKSVYLSDHDKVFSSPMAKQVERWLRACAEPLASSRQAEAHLRAALATPVLGLSL
ADLDHLQQNELAWEARVEQFSHYHRLWQRQGVLPLVRRMMVDFDIPARLLGEFEEGERLL
TDLLHLGELLQQASAELDGEHALIRFLYEAIADPESHGDSHKLRLESDADLVKVVTIHKS
KGLEYPLVFLPFIANHRPVSDKDIPLRWHDAQGNLQLSLSADEETLATADRERLGEDLRK
LYVALTRARHATWLGLAPLQGLENSALGYLISGGRTIAPAELTSALEALAQGSEIAVSEP
PAPTAQHLGLSAQSAEQNAALGHARTPTRPAKEHWWIASYSALRLSGTLTAPTATPLEPT
TAQEATTFEVLDEPQDISLMPDDMESLRAKASLGNLSRESGVYEGLNEHFERTINNEWAS
ADTFHLHKFPRGPGPGTFLHGLLEWAGRQGFAAAANDHDSLNDMLWRRVQLRGWQAWQEP
LAGWLSALLNTPLPLAAPNQQSVALTELTSYQVELEFWLAAQRVNTQAIDALVSKHLLPG
VERPALDTDTLNGMLKGFIDLAFEHQGRFYVLDWKSNYLGPNDSDYEPEALRHALLAKRY
DLQAAFYLLAMHRLLKARLPDYDPHQHLGGSMTVFLRGSRSPGRGVFSEPAPVELIEALD
SLFAGASFSSPAQEATV
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcccgccccgcttaacccacttacgctaccgcttcacggcagccgcctgatt
gaagccagcgcgggcacgggcaaaaccttcaccatcgcgctgctctacgtgcgcctggtg
ctgggcgggcagcacagcgaagaccacagcgcctttgtgcgcccgctcaccccgccggaa
attctggtagtcaccttcaccaatgccgccacccaggaactgcgtgaacgtatccgccac
cggctggtagaagccgctgcggtgtttagggccactgatgatactggttcagactctctg
ctactccagctccgcgagcaatatgcagaggccacttggcccgcctgcgcccgccgcctg
gagctagccgccgaatggatggacgaagccgccgtttccaccatccacagctggtgctac
cgcatgctgcgcgaacacgccttcgatagcggcagcctgttctcgctcaacctagaaaac
gaccagcgcgaactggagcaagaagtggtgcgcgactactggcgtaccttctactacccg
ctggatgccgatgccctgggcagcattacccgctactggaaatcgccggataaactccac
gaagatgtacgcaagctgctccacgaaagcgacgccctcggcagccaacgccccgcgcca
gccgacacattaagcgctgccgaagccgaacgcagcgccacgctcagcacactaaaagcc
ccctggcacgcttggctagatgaactggtgcccgcaatggaagaggccgccaaacgcaaa
gccttcaaaggccaaagcttcaacgccaaaagccgcgccagctggcttggcgcactgcgc
gaatggtgcgaaagcgaccttgagcgccccgcgttgacgcccgccgcctggaaacgcctg
accccagacggcatggccgagatatggaaagagggcgcccccccctgcccagccgcctgg
gaagcgctggcggatatgcccgccgccctcaacgccttaccggaaccgcgcaacgacttg
ctgattcacgccgtgcagtggtgcaaagtacgtatggagcgcgagcaggaacgccgcgca
gaaatgggccccaacgacctgctcacccatttagaccgcgccctgcaaggccccaacaaa
gatgccctggccgcgcagattctgcgccagttccccgtggcactgattgacgagttccag
gacaccgacccgattcagtaccgcatttttaacgcggtctatgacgtcgccaacccccgc
cgcgatgccgctatgctattgatcggcgaccccaagcaggccatctacgcctttcgcggt
gcggatattttcacctatctgcaagcccgccaagacaccgcaggccgccacgtcacgctg
ggcaccaacttccgttccagccgcgccatggtggaagccgtcaatcactgcttccactac
gccgatcagcactcggctggggcgtttctatttcgcgaagaaggcggtgagaacccgctg
ccgttcttatcggtagatgccaaaggccgcgacgaacaattggtgcaccaaggcaagccg
ctgcccgccatgacgctctggccgttaacaagcgaagagccactttccaaaaccgcctac
cagaccgagatggccgagcgttgcgcctcttatatggtggagctgctcgcggcaggccaa
agtggcaataaacaaggcaaaagcggcttccaaaaaggcgatgacctaagcccgctaaaa
ccttccgatatggcagtgctggtcaacggcctgcaggaagcccgcgccattcgcttagcg
ctggccagccgcggggtgaagagtgtctacctttccgaccacgacaaggtgttcagctcg
cccatggcgaagcaggtagaacgctggctgcgcgcctgcgccgagccactggctagctcc
cgccaggccgaagcccacctgcgcgccgctttggcaacgccagtgctggggctcagtttg
gccgaccttgatcacctgcaacaaaacgaactggcctgggaagcgcgggtggagcaattc
agccactatcatcgcctatggcagcgccagggtgtgctgccgctggtacgccgtatgatg
gtggatttcgatattcccgcccgcctactgggggaattcgaagagggtgagcgcttgctc
accgacctgctgcacttaggcgaactgctgcagcaagccagcgcagaactggatggcgaa
cacgcgctgattcgctttctgtatgaagccattgccgacccggaaagccacggcgacagc
cacaaactgcgcctggaaagcgatgcggatttggtcaaagtggtcaccatccacaaatcc
aaaggccttgagtacccgctggtattcctgccgtttatcgccaaccaccgcccggtgagc
gataaagacataccgctgcgctggcacgacgcccaaggcaaccttcagctcagcctaagc
gccgatgaagaaacgctggccaccgccgaccgcgaacgtttaggggaagacctacgcaag
ctttatgtggcgctaacccgcgcccgccacgcgacttggctggggctagccccgctgcaa
gggttggaaaatagcgccctcggctacctgattagtggcggaagaaccattgcaccggca
gagctaaccagcgcgctggaagcgctggctcaaggcagcgagattgctgtcagcgagcca
ccggcacccactgcccagcaccttgggctctctgcacaaagcgccgaacaaaacgccgcg
cttggccacgcccgcacgcccacgcgcccagccaaggaacactggtggattgccagctac
tcggcgctgcgcctttccggcacgctcaccgcccccacggcaacgcccctggaacccacc
accgcccaggaagccacaacatttgaagtactggatgaaccacaagatatttcgctaatg
cctgatgacatggaaagtcttcgagcgaaggccagtctaggcaatctttcgcgagaaagc
ggagtttacgaggggttaaatgagcatttcgagcgaacgattaacaacgaatgggcgagc
gcagacactttccacctgcataaatttcccaggggaccagggccgggcactttcctgcac
gggctattggaatgggcaggcagacaaggctttgcagccgctgccaacgaccacgattca
ctcaacgatatgctatggcggcgcgttcagctacgcggctggcaagcatggcaggaaccg
ctggctggctggctttcagcgctactcaacacgccattaccgctggccgcgccaaaccaa
caaagcgtcgcgctcaccgaactcaccagctaccaagtagagctagagttctggttggcc
gcccaacgggtcaacacccaagcgattgatgccctggtaagcaagcacttactgccaggg
gttgagcgcccagccctggacactgacaccctaaacggcatgctcaaaggctttatcgat
ttagccttcgagcaccaagggcgcttttacgtactggactggaaatcgaactatttaggg
cccaatgacagcgattacgaaccggaagccttgcgccatgcgctactggccaagcgctac
gatctccaggccgcgttttacctactggctatgcatcggctgctaaaagcgcgcctgccc
gactacgacccgcaccagcacttgggcggttcaatgacggtatttctgcgcggcagccgc
agccctgggcgcggggtattttccgagcccgccccggttgaactgatcgaagcactggac
agcctgtttgcaggcgcatcgttttcaagccccgcacaggaagcgacggtatga
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