Halomonas sp. XH26: J4377_12625
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Entry
J4377_12625 CDS
T10290
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J4377_12625 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_12625 (recD)
Enzymes [BR:
haxh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J4377_12625 (recD)
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J4377_12625 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
AAA_22
Helicase_RecD
UvrD-helicase
nSTAND3
HerA_C
AAA_28
SLFN-g3_helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UTA78801
LinkDB
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Position
2771463..2773877
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AA seq
804 aa
AA seq
DB search
MSKPKDTHTFDLFGDAIETQDAQPSTASTPVSAHPALSDTAELLTLCERWVARGWLRDLD
RALVRFLAAEAPDAPALLLLAAALASHQLGRGHVCLDLNATLNAPDFALSLPPEGDDLSD
PPPLPSDVLATLTLSEWQAALHHPLLTSEGPGNTPLVVVTTHSGAGDKSHTRLYLRRYWQ
YEQTLHQQIASRLEDENTTHTQAVNDNATTATDNRCRRPIYWAMGDDSHPGLLPQALHIL
FKPSDGLDWQKTACALAARNRFGIITGGPGTGKTTTVVRLLALLQTLQLAHSPSQPLRIR
LAAPTGKAAARLNESIAGQVSSLPLAQLEKLLTNCVMSEDETRRSATKTRSLHPVNEQFE
ERFNTVSSSAIAIPTEVTTLHRLLGARPDTRHFRHNAANPLALDVLVIDEASMVDIEMMA
AVLSALPANAQCVLLGDKDQLASVEAGSVLGDLCRRAEAAHYTQETAQWLESATGQPLPP
EYLDADGQPLDQAITMLRVSHRFNEHSGIGQLAQAINQPSHAQTDREKQQAVSAVLRHGY
PDLHHLTLADDTALDKLVIHGSADKFLNSGEGRTNHKSEPIAPPTGYRHYIKVLNAQRPR
GESFEDNPAAYNAWASEVLSAYSHFQLLCALRKGPWGVEGLNLHIAKTLRSEKLLFGSDY
TLEKGWYEGRPVLVTQNDYGLKLMNGDIGITLAVPDPRNPQQKLLRVAFPSSSATSEADN
PIRWVLPSRLHSVETVFAMTVHKSQGSEFLHTALLLPPTINPILTRELVYTGITRARDWL
TLVEAKRGVLNEAVTREVMRVSGM
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcccaaagacacccacaccttcgacctgtttggcgatgccatcgagacacag
gatgcccagccctccacagcttccacgccagtgagcgctcaccctgcgttaagcgatacc
gctgaattgttaaccctatgcgagcgctgggtagcaagaggctggctgcgtgatttagac
cgcgctctggtgcgctttttagcggcagaagcaccggatgcccccgcactgctactgtta
gccgccgcgctggccagccaccagctaggccgaggccatgtgtgtctagatttaaacgcc
acgcttaacgcaccggatttcgccctttcgctaccgccagaaggggatgatttaagcgac
ccgccaccgctgcccagcgacgtgctggcaacgctcacgctaagcgaatggcaagctgcg
ctgcatcacccactgctcaccagcgaaggccctggcaatacaccgctggtggtagtaacg
actcactcaggcgccggtgataagagccacacgcggctctacctacgccgctattggcag
tatgagcaaaccctgcaccagcaaatcgccagccgcctagaagatgaaaacaccacgcac
acacaggcggtgaatgataacgccacgacggcaactgataaccgttgtaggaggccaatt
tattgggcgatgggtgacgatagtcaccctggccttctcccccaggccctgcatattctg
ttcaagccaagcgacggcctcgactggcaaaaaaccgcctgcgccctggccgcccgcaac
cgtttcggcattattaccggcggccccggcaccggcaaaaccaccaccgtggtgcgcctg
ctcgccctgctgcaaacgctgcaactggctcactcacccagccaaccgctgcgcattcgc
ctagccgcccccaccggcaaagccgccgcccgcctaaatgaatccatcgccgggcaggta
agcagtttgccattggcacagttagaaaaactcttaacgaattgcgttatgagcgaagat
gagacaaggcgaagcgcgacgaaaacgcggagtttacatcctgtaaatgagcagtttgag
gagcgcttcaacacagtatcatcaagcgcaatagcaattcccactgaagtgacaacactg
caccgccttctgggtgcccgccccgacacccgccacttccgccacaacgccgccaacccg
ctagcgctggacgtactggtgatcgacgaagcctccatggtggatatcgaaatgatggcc
gccgtgctgagtgccctgcccgccaatgcccagtgtgtgctgctgggggataaagaccag
ttggcatcggtagaggctggctcagtacttggtgatttatgccgccgcgccgaagccgcc
cactacacccaagaaaccgcccaatggctggaaagcgccaccggccagccgctgccgcca
gagtacctggatgctgacggccagccgctcgaccaagccattaccatgctgcgagtaagc
caccgctttaacgagcacagcggcatcggccagttggcccaggcgattaaccagcccagc
catgcccaaactgaccgggaaaaacagcaggccgttagcgccgtgctgcgccatggctac
ccagacttacaccacctaacgcttgctgatgacaccgcgctagataagttggtaattcat
ggcagcgcggataagtttctcaatagtggtgaaggccgcaccaaccataaaagtgaacct
atcgccccgcccactggctaccgccattacataaaggtgttaaacgcacagcgcccgcgc
ggggagtcgtttgaggacaacccagcggcctataacgcctgggcctctgaggtgctaagc
gcctacagtcactttcaactgctatgcgcgctgcgcaaaggcccctggggggtagaaggc
ttaaacctgcatatcgccaaaaccctgcgcagcgaaaagctgctgtttggcagtgattac
acgttagagaaaggctggtatgaaggccgtccggtgctggtcacccaaaacgactatggc
ctaaaactaatgaacggcgatatcggcatcaccctggcggtgccggatccccgcaatccg
caacagaaactgttgagagttgcctttccttcatcaagtgccacgagcgaggccgataac
cccatccgctgggtgctgccctcccgcctgcactcggtagaaaccgtgttcgcgatgacg
gtacacaaatcccaaggctcggagttcctgcacaccgccctgctgctaccgcccactatc
aacccgattctcactcgcgagctggtctataccggcatcacccgcgcccgcgactggctc
acgctagtggaagctaaacgcggggtgttgaatgaggcggtgactagagaggtgatgagg
gtgagtgggatgtaa
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