Halomonas sp. XH26: J4377_13895
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Entry
J4377_13895 CDS
T10290
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
haxh Halomonas sp. XH26
Pathway
haxh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J4377_13895 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haxh03021
]
J4377_13895 (rpoD)
Transcription machinery [BR:
haxh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J4377_13895 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
KASH_CCD
Motif
Other DBs
NCBI-ProteinID:
UTA79041
LinkDB
All DBs
Position
complement(3034471..3036327)
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AA seq
618 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIGMINDMGISVVEE
APDEDTLMMSDHSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGTREVMSALAYLPGAVASILDAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVA
EAEVPEPEPEAELSDDDDLDSDGDDEDDDSTASEGGPDPEEAKARFEQIREQNAAVEAAL
AKYGRGSAELKSEQSRLAELFSPIKLVPKHFERLVGQVRISVEQVRAQEKAVMQLCVKKA
KVPRKTFIKSFPGYESNPKWLDTFQEAQPKYADRLEPLRADIARSQRKIAFEEDMVQLTV
ADLKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMG
REPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDMA
TGEGLIEATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEPLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatgcgcagcagcagtcacgtctgaaggagttgatcgcgcgcggcaaggaa
cagggctacctgacctatgccgaggtcaacgaccatctacccgaggatatcgccgacccg
gatcaagtggaagacatcattggcatgatcaacgacatgggtatcagtgtcgttgaagaa
gcgccagatgaagacactttgatgatgtcggatcactccacggacgagtccgctgcggaa
gaggccgtcgcggcactcgccgccgtggaaagcgacgtcggtcgcactaccgaccctgtg
cgcatgtacatgcgcgaaatgggtacggttgaacttctaacccgcgaaggtgagatcgaa
atcgccaagcggatagaagagggcacgcgggaagtgatgtcagcgctggcgtatttgcct
ggcgctgttgcttctatcctggatgcctacgatgccacgcaggatgaagaagcgcctggt
cgcttgtctgatctgttctctggctttatcgaccccgacgaggggattccaggcgttgca
gaagccgaagtgcccgagcctgagccggaagccgagttgagcgatgatgatgatctcgac
agcgacggtgacgacgaagatgacgacagcacggccagcgaaggcggccctgatccggaa
gaagcgaaagctcgtttcgaacaaatccgtgagcagaatgccgctgttgaagctgcgttg
gcgaaatatggtcgtggtagcgcggagcttaaaagtgagcagtcgcgtttagccgagctg
ttttcgcctattaagctggtgccgaagcattttgagcgtctggtcggccaagtacgtatt
agtgttgagcaggtgcgtgcccaagaaaaagcggttatgcagctgtgcgtgaagaaagct
aaagtaccgcgcaaaaccttcattaagtcgttccctgggtacgagtctaatccaaaatgg
ttagacaccttccaggaggcgcagcccaagtatgctgaccgtcttgagccactgcgcgcc
gatattgctcgttcgcagcgcaaaattgcctttgaggaagacatggtgcagctcaccgtg
gccgacctcaaggaagttaaccgcaagctctctattggcgaggcgaaagcacgtcgtgct
aagaaagagatggttgaggctaacctgcgtttggtaatttcgattgcgaagaaatacacc
aaccgtggcctgcagttcctggatctaatccaagaaggcaacattggcttgatgaaagcg
gttgataagttcgaatatcgccgtggttacaagttctcgacctatgccacatggtggatt
cgtcaggcgattacgcgctctatcgctgaccaggcacgcaccatccgtattccggtgcac
atgattgagacgatcaataagctcaatcgtgtttctcgtcagatgctgcaggaaatgggc
cgcgagccaacgccggaagagctgggcgaacgcctggaaatgccggaagacaaagtacgc
aaagtgctaaaaattgccaaagagccgatctctatggagacgccgattggtgatgacgac
gattcgcacttaggtgactttatcgaagacggcactatgctgttgccgattgatatggcc
accggcgaaggcttgatcgaagcaacgcgtaacgtccttggcggcttaaccgcacgtgaa
gcgaaagtgctgcgcatgcgtttcggtatcgatatgaataccgaccacacgctagaagaa
gtgggtaagcagtttgacgttactcgcgagcggattcgtcagatcgaagctaaggcgctg
cgcaagctacgccatccgagtcgctctgagccgctgcgctcattcctcgacgagtga
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