Halomonas axialensis: HAALTHF_06420n
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Entry
HAALTHF_06420n CDS
T06639
Name
(GenBank) hypothetical protein
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
haxi
Halomonas axialensis
Pathway
haxi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haxi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HAALTHF_06420n
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haxi03021
]
HAALTHF_06420n
03400 DNA repair and recombination proteins [BR:
haxi03400
]
HAALTHF_06420n
Enzymes [BR:
haxi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HAALTHF_06420n
Transcription machinery [BR:
haxi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HAALTHF_06420n
DNA repair and recombination proteins [BR:
haxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HAALTHF_06420n
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
Motif
Other DBs
NCBI-ProteinID:
BBI70673
LinkDB
All DBs
Position
complement(414362..416128)
Genome browser
AA seq
588 aa
AA seq
DB search
MQRQAVPTLRADKPLVGTGMERFVARDSGVCAVARRGGVIDSVDARRVVVRVNEDEIIGG
EAGVDIYNLTKYTRSNQNTCMNQRPIVRPGDNVARGDILADGPSVDMGDLALGQNMRIAF
MPWNGYNFEDSILLSERVVQEDRFTTIHIQELTCVSRDTKLGPEEITSDIPNVGESALGK
LDEAGVVYIGAEVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRAPTGM
KGTVIDVQVFTRDGVEKDSRALSIEQMQLDEVRKDLQETYRIAEDATFERLKRTLDGQAV
NGGPNLKKGDVLSETYLDELPRQQWFKLRMQDEAYNELLAQADEQLENRRKEMDERFEDK
KRKLTQGDDLAPGVLKIVKVYMAVKRRIQPGDKMAGRHGNKGVISAIMPIEDMPFDEKGE
PVDVVLNPLGVPSRMNVGQILETHLGMAARGLGVKIDAMLRDARGQQVAEIRDFLGQVYN
TPGTRVEDIDSLTDDEVIALAKNLKGGVPMATPVFDGAKEHEIKHLLKLADIPESGQMTL
YDGRTGDAFDRPVTVGYIHAEAQPPGRRQDARAFYRLLLACYAAAAGW
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcaggccgttccgaccctgcgtgccgacaagccgctagtaggtaccggcatg
gagcgcttcgtggcccgtgactccggcgtttgtgccgtggcgcgccgtggcggcgtcatc
gactccgtggatgcgcgtcgtgtcgtggtgcgggtcaacgaagacgagatcatcggcggt
gaagccggcgtcgacatctacaacctgaccaagtacacccgttccaaccagaacacctgc
atgaaccagcgccccatcgtgcgccctggtgacaacgtggcgcgtggtgacatccttgcc
gacggtccgtccgtcgacatgggcgacctagcgcttggccagaacatgcgtatcgcgttc
atgccctggaacggctacaacttcgaggactccatcctgctctctgagcgtgtggttcaa
gaagaccgtttcaccaccatccacatccaggaactgacctgcgtgtctcgcgacaccaag
ttagggccggaagagattacctctgatattcccaatgtcggtgaatccgcactgggtaaa
ctggacgaggcgggcgttgtgtacatcggcgctgaagttggccccggtgacattctggtc
ggtaaggtaacaccgaaaggtgaaacccagctgacgccagaagagaagctgctgcgtgcc
atcttcggtgagaaagcgtctgacgttaaagatacttccctgcgtgccccgaccggcatg
aaaggtacggttatcgacgttcaggtgtttactcgtgacggcgtcgagaaagactcccgt
gcgctctccatcgagcagatgcagctggacgaagtgcgcaaggatcttcaggaaacctac
cgtattgccgaagacgcaacctttgagcgtctgaagcgtacgctggatggccaagcggtt
aatggcggcccgaacctgaagaaaggcgacgtgctgagcgagacgtacctggacgaactg
ccccgtcagcagtggttcaaactgcgcatgcaggatgaagcctacaacgagctactggcc
caggccgacgaacagcttgagaaccgccgtaaagagatggacgagcgtttcgaagataag
aaacgcaagctgacccagggcgacgacctcgcaccgggcgtgctgaaaatcgtcaaggtc
tatatggcggtcaagcgtcgcattcagcccggtgacaagatggccggtcgtcacggtaac
aagggtgttatctccgcgatcatgcccatcgaagacatgccgttcgacgagaagggcgag
ccggtggacgtggtgctgaacccgctgggcgtaccgtcgcgtatgaacgtcggtcagatc
ctggaaactcacctgggtatggcggcacgtggtctcggggtcaaaattgacgccatgttg
cgtgatgcgcgtggccagcaggttgctgaaattcgcgacttcctgggtcaggtgtataac
acgcccggtacccgcgtcgaggatatcgactcgctgaccgatgacgaagtcatcgcgctg
gcgaagaacctaaagggcggtgtgccgatggccacaccagtgttcgacggtgccaaagag
cacgaaatcaagcacctgctgaagctggcggacattccggagtcgggccaaatgacgctg
tacgatggccgtaccggcgatgcgtttgaccgtccggtgaccgttggctacatacatgct
gaagctcaaccacctggtagacgacaagatgcacgcgcgttctaccggctcttactcgct
tgttacgcagcagccgctgggtggtaa
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integrated database retrieval system
