Vreelandella aquamarina Althf1: HAALTHF_32940n
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Entry
HAALTHF_32940n CDS
T06639
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
haxi
Vreelandella aquamarina Althf1
Pathway
haxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAALTHF_32940n
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxi03019
]
HAALTHF_32940n
03009 Ribosome biogenesis [BR:
haxi03009
]
HAALTHF_32940n
Enzymes [BR:
haxi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HAALTHF_32940n
Messenger RNA biogenesis [BR:
haxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HAALTHF_32940n
Ribosome biogenesis [BR:
haxi03009
]
Prokaryotic type
rRNA processing factors
HAALTHF_32940n
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
BBI73804
LinkDB
All DBs
Position
complement(2154232..2155578)
Genome browser
AA seq
448 aa
AA seq
DB search
MCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADI
ESRQGVRVVLLPSPEMDTPHYDVQRLRDDHLDEDESHTLSSFELSTDTDVGKEPDPSFAP
PAQRAEAAVKSVVHNAPAPASLQTEETPAKAAAATLHPPLLLNSPACLAALSAALLNCWA
AMTAASSQLRKPRHQVSRLNSRRVAARNAVNAAPNLFRSAATPGPKTSSAAAPAAPATVV
VIRSRGDAKAQENAKNTHQKEQPVNKDAPKEEAAKPAVQPDNRRDKPRDAKPKSDERTPT
AQADDSKQDDGKPKRTRNNPRHRSRKQALNPQAEAEQLKLQAEAEQAPQPQEAPAATATS
EAASAPDNNTEASPTPADKPATEQVSSEKTIALSRLKRQRTTAQLLSARPTAPTKHASRR
ASAVRLSLSQCSTKPPAHQRLTAAMQQP
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcccacgctgtaacggccaaggcaccatccgcgacgtgcgttcactatcgctctcg
atcatgcgcctgattgaagaagaggcaatgaaagagcgcagcgcgcagattcgcgccatc
ttgccggtaccggtggccacttacctgctaaatgaaaagcgcagcgtactggcagatatc
gagtctcgccaaggcgttcgcgtggtgctgctacccagcccagaaatggatactccgcac
tacgatgttcagcgcctgcgggatgaccatttggacgaagacgagagccatacgctctcc
agcttcgagctgtctaccgacaccgatgttggcaaagaacctgaccctagctttgcaccg
cctgcacagcgggccgaagcggccgttaagagcgtagtacacaacgccccagcaccggca
tcgctgcaaacagaagaaacgcctgctaaagcggctgcagccaccctgcacccgccgcta
ctgctgaacagcccagcgtgcttggccgctttatccgcggctttgctaaactgctgggcg
gcgatgacggcagccagcagccagctcaggaagcccaggcaccaagtaagcagactgaac
agccgaagagtagccgcccgcaacgcagtgaacgccgctccaaacctgttcaggagcgca
gcgacaccagggccaaaaacgagcagcgcagcggccccagccgcacccgcaaccgtcgtc
gtcatccgcagcaggggcgatgccaaggcccaagagaacgcgaaaaacacgcatcagaaa
gagcagcccgtaaacaaggacgctcctaaagaggaggcagccaagcctgccgtccagccg
gataaccgtcgtgacaagccacgtgatgccaagcccaaaagcgatgaacgcacgcctacg
gcccaggctgacgacagcaagcaagacgacggcaagccgaagcgtacgcgtaacaacccg
cgtcatcgttcgcgcaagcaggcgctaaaccctcaagcggaagcagaacagctgaagctg
caggcagaagcggagcaggcacctcagccccaagaagccccggcagccacagcgacatct
gaagccgctagcgcgcctgacaacaacacggaagcatcgccaacaccggctgacaagcca
gcaactgagcaagtaagcagcgaaaagacgatagcgctgagcaggctcaagcggcagcgg
acgacagcacaactgctgagcgcccggccaacagcgccgacaaagcacgcaagtcgacgc
gccagcgccgtcaggctcagcctgagtcagtgcagcacgaagccaccagcacaccagcgg
ctgacagcagcgatgcagcagccttga
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