Halomonas axialensis: HAALTHF_50130n
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Entry
HAALTHF_50130n CDS
T06639
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haxi
Halomonas axialensis
Pathway
haxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAALTHF_50130n
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxi03019
]
HAALTHF_50130n
03009 Ribosome biogenesis [BR:
haxi03009
]
HAALTHF_50130n
Enzymes [BR:
haxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HAALTHF_50130n
Messenger RNA biogenesis [BR:
haxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HAALTHF_50130n
Ribosome biogenesis [BR:
haxi03009
]
Prokaryotic type
rRNA helicases
HAALTHF_50130n
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DbpA
DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBI75777
LinkDB
All DBs
Position
complement(3280538..3281932)
Genome browser
AA seq
464 aa
AA seq
DB search
MEVATLCGGQEYREQLGALKRGAQVVVGTPGRVIDHLDRGSLKLDGLSALVLDEADEMLR
MGFIDDVKRVVADTPKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQR
LVRVDGGAKLEALSRILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSL
RERTITRLKRGKVDVLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSG
IAITFAGFREGRKVGWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQR
ALVERLVEEGHDAVELACAFAAMARADEAPIGRLQAPRKERAPRDGAPGKPGGARRERSS
APSEGMTRYRVSVGHKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPST
ILAKMARARVAGRPLEISEDRAPERAPRRRRDDGDAPVRRRERA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttggaagtggctaccctctgcggtggtcaagagtaccgtgagcagttaggcgcgctgaag
cgtggtgcccaagtggtagtgggcacgccgggccgcgtgattgaccacctggatcgtggc
agcctgaagttagatggcctgtctgcgctggtgctggacgaagccgacgaaatgctgcgc
atgggctttatcgacgacgtaaaacgcgtggttgccgataccccgaaagatgctcagcgt
gtgttcttctcggcgaccctgccgacggaaatcgagcgcatcgtcaaccgttatttggtc
aacccggtgaaggtggcgatcgaatcgcgcaccaccacaggtgaaaacatcgagcagcgc
ctcgtgcgtgtcgacggtggtgccaagctggaagcgctgtcgcgcattctcgaagtcgag
ccggtcgacgcggcgatcgttttcgtgcgcacccgtgctgcctgtaccacgctggtcgag
cagttgactgctcgtggcgtcaacgccgctggcctatcgggtgatctagatcagagcctg
cgtgagcgcacgattacccgcttgaagcgtggcaaagtggacgtgctgattgcgactgac
gttgctgcccgtggtcttgacgttccgcgtattacgcacgtcatcaactacgacctgccg
caagacgctgaagcctacacccaccgtatcggtcgtaccggtcgtgcgggccgtagcggc
atcgcaatcactttcgcgggcttccgtgaaggtcgcaaagtgggttggatggagcaggca
accggtcagaaaatgactgaaatgccgctgcctgacgaagccgctattcgcgcccaccgt
gatgaagtgttccatcatcgcgttgttgccgcgctgacgaaaggtgcagaagagcagcgt
gccctggtcgagcgtttggtggaagagggtcacgacgccgtcgagctggcctgcgcgttt
gccgccatggcccgcgccgacgaagcgccgattggtcgtcttcaggcaccgcgcaaagag
cgtgccccgcgcgatggcgcaccgggcaagccgggcggtgctcgtcgcgagcgctccagc
gcgcccagcgaaggcatgacccgctaccgtgtttccgttggccataaagacggtgtgaag
ccgggtcaactggtcggcgcgctggcgaacgaaggcggcattgaaggcgcgcgtatcggt
cgtatcgatattcgcaacgctttctcggtcgttgaactgcctagcggtctgccgtctacc
attctggccaagatggctcgtgcccgtgtggccggtcgcccgctggaaatcagcgaagac
cgtgcgcctgagcgtgcaccgcgccgccgtcgtgacgatggtgacgcgccggttcgccgc
cgcgaacgtgcgtaa
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