Harmonia axyridis (harlequin ladybird): 123676109
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Entry
123676109 CDS
T10650
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
haxr Harmonia axyridis (harlequin ladybird)
Pathway
haxr03013
Nucleocytoplasmic transport
haxr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haxr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123676109
03015 mRNA surveillance pathway
123676109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxr03019
]
123676109
Enzymes [BR:
haxr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123676109
5.6.2.5 RNA 5'-3' helicase
123676109
Messenger RNA biogenesis [BR:
haxr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123676109
mRNA cycle factors
Common to processing body (P body) and stress granule
123676109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
DUF7953
AAA_7
AAA_32
AAA
AAA_10
AAA_5
YkyA
Motif
Other DBs
NCBI-GeneID:
123676109
NCBI-ProteinID:
XP_045467767
LinkDB
All DBs
Position
3:complement(7801411..7809979)
Genome browser
AA seq
1097 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDADLIGADTQGSECEFTDFTIPSQTQASQIEHTTKTPKIAG
LQVNNDIGIKIASAANALGELQFEEEDEEYFNSKELPDYACKYCGIHEPNCVVMCNCCKK
WFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKAD
SVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKVPSEQEQLRARQITAQQI
NKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKE
SQTQENIEVRWDIGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKPWAGVGHVIK
VPDNYGEDIGIELKNSSGVPSDCNSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSAYIY
HRLLGHDVEDVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTS
ATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTNLKVVRLCAKSREAIDSPVSFLALH
NQIRKMEGNTEQQKLQQLKDETGELSSVDEKRYRMLKKLAEKELLEAADVICCTCVGAGD
PRLTRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQ
SLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCANERKLKIEFPWPIAE
RPMFFHVTQGQEEIAGSGTSYLNRTEASNVEKIATKFLKAGVKPEQIGIITPYEGQRAYL
VQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRAKYGIIIVGNPKVLSKQPLWNHLLSFFKEQKVLVEGPLTNLKESLIQFSKPKKLVNSE
NPGSHFMTTSVFDAREAIIPGSVYDRTNTAINGQYNYPRGAVPLDMFSRTHDPISYISQD
RSQTNMNLPVPVGMFMNMAHIPPRFYNQHQQALQARQQQNPRNRKPPQRQKGGKTLSQDQ
TTQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQAELSQDPYMIEYQSQMDGLLSQDSTY
QGDRSFYQPNAQFSQPY
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtatggacccagttcacaaacactcacttttttagatactgaagat
gctgatttgataggtgctgatacccaaggttcagaatgtgaatttacagatttcacaatt
ccatctcaaacacaggcatctcagattgaacacacgacgaagacacctaaaattgctgga
ttacaggtgaataacgatattggaattaagatagctagcgcagcgaatgcgttaggagaa
cttcaatttgaagaggaggatgaagaatattttaatagtaaggagttgccagactatgct
tgcaagtattgtggtatacatgaacctaattgtgttgttatgtgcaattgttgtaaaaag
tggttttgcaacgggcgcggaaatacctctggaagtcacataatcaatcatttggtgagg
gctaaacataaggaagttactctacacaaggatggtccattgggggaaacaatactagaa
tgctatagctgtggagtacgaaatgtgtttgttttgggcttcatccctgcaaaagctgat
tctgttgttgttttattgtgtagacaaccgtgtgctgcacaaaattcgttgaaagatatg
aattgggatcaagagcagtggaaacctctgattgctgatagatgtttcctaacttggctt
gttaaggttccatcagaacaggaacaacttagggctcgtcagatcacagcccaacaaata
aataaactagaggagttatggaaggataatgttgatgcaactttccaagatctagagaaa
ccaggagttgatgaagagccacaacaggtcttattgcgttacgaagacggttatcaatac
caaaatatatttggtccgttagtaaagcttgaagctgactatgacaagcgtcttaaagaa
tcgcagacccaagaaaacattgaagtaaggtgggacattggtcttaataaaaagactatc
gcctatttcaccttagctaagacagatggggatatgaagttaatgcatggtgacgaattg
agactgaggtatgttggggagatgcataagccctgggctggggtaggtcatgtcatcaag
gttcctgacaattacggggaagatataggaattgagcttaagaacagtagcggcgttcct
tctgattgcaacagcaactttgtggtagatttcatatggaaaagcaccagttttgacagg
atgcagctagccttacgtaaatttgctgtggacgattcatcagtatctgcttacatatac
cataggttgcttggtcacgatgtcgaagatgtcttgttccgttgtcacttacctaagcat
ttttctgcaccaaatcttcctgatctgaatcgctctcaagtctatgctgtgaaacacgca
ttgcagcgccccttgtctctgatacaaggtcctccaggtactggaaagaccgtcacttct
gcaaccattgtctaccagttggtaaagcagaacggaggaccagtgttggtctgtgcaccc
agtaacacagctgttgatcaactcaccgaaaagatacataagacgaatttgaaggttgtc
agactgtgcgcaaaatccagagaggctatcgattcccctgtcagcttccttgctctgcac
aatcagatcagaaaaatggagggtaacacggaacagcagaaattgcaacaactgaaagac
gagaccggcgagttgagttcggtcgacgagaaacgatacaggatgttaaagaaactggcg
gagaaggaactcctggaagctgccgacgtcatatgctgcacatgcgtgggcgctggtgat
cccagactcaccagattgaagtttcattcgattctgatagacgagagcatgcaggctacc
gagccagaatgtatggtacctgttgtgctgggagtgaagcaactgattttggttggtgat
cattgccaactgggacctgtggtgatgtgtaaaaaggcagctagagcgggtctttcgcaa
agtttattcgagcgacttgttgtgttaggaataaggcctttccgtctggaggtgcagtac
aggatgcatccagaattgtcaaggtttccatctaatttcttctacgaaggcagtttgcaa
aatggagtgtgcgctaatgagagaaagttgaaaattgaattcccctggccgattgctgag
agacccatgttttttcatgtcactcaagggcaagaagagatagctggttcaggtaccagt
tacctaaataggaccgaagcttcgaatgttgaaaaaattgccaccaagtttttgaaggca
ggagttaagcctgagcaaattggtatcatcacgccttatgaaggccagagagcgtattta
gtgcaatacatgcaatatcagggctcattgcacagtaaattgtatcaggaaatagaaata
gccagtgtggacgctttccaaggccgtgaaaaggacataataattatgtcttgcgtgaga
tccaatgagcaccaaggaatcggtttccttaatgaccctcgccgactcaacgtagccctc
accagggccaaatacggaatcatcatagtgggaaaccccaaggtactctcgaaacaaccg
ttgtggaaccatcttctgtccttcttcaaggaacagaaggttttagtagagggtcccttg
accaacctgaaggagtcgctgatacagttctcgaagcccaagaagctagtcaattccgaa
aatccaggatcccatttcatgaccacctctgtgttcgatgcaagagaagccatcataccc
ggatcggtctacgatagaacgaacaccgccatcaacgggcaatacaactatcccaggggc
gcagtacccttggatatgttcagcagaacacacgatcccatcagttatatcagccaagat
cgcagccagaccaatatgaatcttccggtgcccgttggtatgtttatgaacatggcacac
attccacctaggttctacaaccaacaccagcaggccttgcaagcaaggcaacagcagaat
cctagaaatcgcaagcctccccagagacagaagggagggaaaacgttgagtcaagaccag
acgactcaacccttcagccagagcttgcagctgacccaaggcatgtcgcaacctggacta
tcccagcctggcttcagcctctcacagccaggtctgagccaggcggaactcagtcaagat
ccttacatgattgaatatcagagccaaatggatggactgttatctcaagattctacctat
cagggggataggtctttttaccagccaaacgctcagttttcccaaccctactga
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integrated database retrieval system
