Harmonia axyridis (harlequin ladybird): 123676195
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Entry
123676195 CDS
T10650
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
haxr Harmonia axyridis (harlequin ladybird)
Pathway
haxr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haxr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123676195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haxr03041
]
123676195
Enzymes [BR:
haxr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123676195
Spliceosome [BR:
haxr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123676195
Complex C
U5 SnRNP specific factors
123676195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
SWI2_SNF2
Peptidase_C39
Motif
Other DBs
NCBI-GeneID:
123676195
NCBI-ProteinID:
XP_045467898
LinkDB
All DBs
Position
3:14779097..14789020
Genome browser
AA seq
2137 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLSGTKMGDKAQRSR
PGKAEERKAKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFL
QEALGDQPRDILCGAADEVLTVLKNEKLKEREKKKETEILLGSIADERFALLVNLGKKIT
DFGNEDIKASATEENIDEQYGINVQFEESEEEDDEDVYGEIREEMDDDDGEEAREDGAIH
AENLGVTEEMKKEKSLHPLDIDAYWLQRKLSKIYNDAMISQAKAAEVLNVLRDAVDDREC
ENQLVLLLGYDCFDFIKLLKKQRQMILYCTLLAKSQSDSEKEKIKNKMLEDPLLTRILKI
LDTGKGEDDRDDEESTAHSSRRKHDSNDVEMTSAAQVTGSRHLIDLEDLVFNQGSHFMAN
KRCQLPEGSFRKQRKGYEEVHVPALKPKPFGDNEKLTPVEELPKYVQPVFEGFKSLNRIQ
SRLCKKTLESDENLLLCAPTGAGKTNVALLCMMREIGKHINVDGTINADDFKIIYVAPMR
SLVQEMVGNFGKRLASYNITVSELTGDHQLTHEQIAATQVIVCTPEKWDIITRKGGEKTF
TSLVRLIIIDEIHLLHDERGPVLEALVARTIRMIESTQEDVRMVGLSATLPNYQDVATFL
RVKPDSGLFYFDNSFRPVALEQQYIGVTEKKALKRYQVMNDIVYEKTMEHAGRNQVLVFV
HSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIH
HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG
ALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKLPDMLNAEI
ILGTIQNMKDAVTWLGYSYLYIRMLRQPTLYGISHDHLKQDQLLEQHRADLIHTAATQLD
KCGLAKYDRKTGQFQATEIGRIASHYYCTHETMQTYNQLLKPMLSEIELFRVFSLSGEFK
NITVREEEKLELQKLMERVPIPIKESMEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVT
QSAARLMRAIFEIVLHRGWAQLADKSLALCKMIDKRMWQSMSPLRQFRKMPEEIVRKIEK
KNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRAMLKVELTIT
PDFQWDDKLHGQSEAFWILVEDVDSEVILHHEYFLLKSKYCQDEHLVKFFVPIFEPLPPQ
YFLRIVSDRWIGAETQLPISFRHLILPEKNFPPTDLLDLQPLPITALRNDKYESLYKNKF
PQFNPIQTQVFNSVYNSDDNIFIGAPTGSGKSTIAEFAILRLFEKNAEGRCVYLVPKDAL
AELIFADWHNKFTQLLGKKVVLLTGETGTDLKLLAKGQIIITTAEKWDVLSRRWKQRKNV
QNINLFIVDELHLVGGQDGPIIEVVCSRMRYISSQIDKPIRMIALSASLTDYRDVAEWLG
CNTNATFNFLPSVRPVPLELHVKGFNITHNASRLISMAKPVYNAISRYSPHKPIIIYVPT
RKQARITAIDLLTSASAEGQPNRFFHADEEDIKPFLDRMSDKTLRETLSQGVAYMHEGLS
ASDLRLVEQLFDSGAVQVAVITRDLCWTVNIFAHLVIIMDVQYYDGKTHTYEDYPITDVL
QMVGRANRPLEDDDAKCVLMCQNSKKEFFKKFLCDPLPVESHLDHRLPDHFNAEIVTKTI
ENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLNDLEQSKCVSIE
DEMDCIPMNLGMIAAYYYINYTTIELFSLSLNSKTKIRGLLEIISSATEYEDLSLRHREE
SILRELSYKLPNKLTSSSGGSPKFNDPHIKTNLLLQAHLCRLQLSAELQGDTENVLNKSI
RLIQTCVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFTNEIIKRCTDKGVE
TVFDIMELEDDDRAKLLQLSDAQMADVARFCNRYPNIELTYEVADKDNIHSGSSVHVNVQ
LEREDEVNGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPG
SHNYTLYFMSDAYLGCDQEYKFSIDVGDFESSGSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctgcggctaggcagctgcaatatgagtacaaagcgaactctaatcttgta
ttgcaagctgatgttagacttatcgaaagaagaagtagagatgaagccacaggagaggtc
atgtctcttgtgggcaaattgtccggaacaaaaatgggggacaaagctcaaagaagtaga
ccaggaaaagctgaagaacgtaaagcaaagcgacaaaaaagagatgaagctcagtatgat
tttacaagaatgaaaggagccactcttttatctgagggtgtggatgaaatggttggaata
atttatagacctaaaacacaagaaacaaggcaaacatatgaagtgttacttagcttctta
caagaagcattaggagatcagccaagagatattttatgtggtgccgcagatgaagtatta
actgtgcttaaaaatgagaaactgaaagaaagagaaaagaaaaaggaaacagaaatatta
ttgggatctattgctgatgaacgttttgcccttttggttaacttgggtaaaaaaataaca
gattttggaaatgaagatattaaagcaagtgctactgaagaaaatatcgatgagcagtat
ggaataaatgtgcagtttgaagaatctgaagaagaagatgatgaagacgtttatggagaa
ataagagaagaaatggatgatgatgatggagaggaggcaagagaagatggtgccattcat
gctgaaaatttgggagttacagaagaaatgaaaaaggaaaaaagcttgcatcctctagat
attgatgcatattggttacaaagaaagctatctaaaatttataatgatgcaatgatttca
caagcaaaagctgctgaagttttgaatgttctgagagatgcagtagatgatagagaatgt
gaaaaccaacttgtccttcttttgggatatgattgttttgatttcataaaattactgaaa
aaacaacgacaaatgattttatattgcacactactggcaaaatcacaaagtgactccgag
aaagagaaaatcaagaacaaaatgttggaggaccctctgcttacccgaattttgaaaatt
ctcgacacaggcaaaggtgaagatgatagagatgatgaggaatctaccgctcattcctct
cgaagaaaacatgattcaaacgatgtagagatgacaagtgcagcacaagtgactggatct
agacatctaatcgatttagaagatcttgtatttaatcaagggtctcatttcatggcaaac
aaaaggtgtcagttgccagagggatcgttcagaaaacagagaaaagggtatgaagaagtt
catgttcctgccctgaaacctaaaccatttggtgataatgagaaactcacaccagtagaa
gaattaccgaagtatgttcaaccagtttttgaaggtttcaaatctttgaatagaattcaa
agtcgactttgcaaaaaaaccctggaatcagatgagaaccttttgctatgtgcgccaact
ggagcaggtaaaactaatgttgctcttttatgtatgatgcgagaaattggaaaacatatc
aacgttgacggtactattaacgctgacgacttcaagatcatttatgtcgctcctatgaga
tcgctggtacaagaaatggtgggaaatttcggtaagaggcttgctagttacaatatcact
gtatcagaattgactggtgatcatcagttgacccatgaacagattgctgctacacaggta
attgtctgcactcctgagaaatgggatattataacaaggaaaggaggagaaaaaacattc
acgtcccttgtgcgattgattattattgatgaaattcatcttttgcacgatgagagaggt
ccagtcttagaggctttagttgccagaactataagaatgattgagtctactcaagaagat
gttcgaatggtcggtctttccgccacacttccaaactaccaagatgttgccacattcttg
agagtaaaaccagattcgggtttattttatttcgataatagtttcaggcctgtggctttg
gaacaacagtacattggtgttactgaaaagaaagcactgaagagatatcaggtaatgaat
gacattgtgtatgaaaaaactatggagcacgctggtcgtaatcaagtattggtatttgtc
cattcccgtaaagaaactggaaaaacagcaagagcaatcagagatatgtgtctagaaaaa
gacactttaggtcaatttctcagagaaggctctgcatctatggaagttttaaggacagaa
gcagaacaagtcaaaaatcaagaattgaaggatttgcttccctacggattcgccatacat
catgctggaatgacaagagttgacaggactttggttgaagatttgttcgcagatagacac
atacaagtgttggtttcaacagccacacttgcttggggtgttaacttacctgcccacaca
gttatcatcaaaggaacacaaatttacaatccagaaaaagggcgatgggtcgaactaggt
gctttggatgtgcttcaaatgcttgggagagctggcagaccgcaatacgatactaaagga
gaaggtatccttatcacaaatcacagtgaactgcaatactacctatctttgttgaatcag
cagctacccattgaatctcagttaatttcgaaactgcctgatatgttgaatgctgaaatt
atacttggaactatccaaaacatgaaagatgcagtaacttggttaggatattcttacctc
tacataagaatgttgaggcaacccaccctgtatggcatatcacatgatcatctaaaacaa
gatcagttgttggaacaacatagagctgaccttatacatacagctgctacacaactagat
aagtgcggcctagcaaaatatgatcgtaaaaccggacagttccaagctacagaaatcggt
agaatagcttcccattattattgtacacatgaaactatgcaaacgtacaatcaattactc
aaaccaatgctcagtgaaatagagcttttcagggtcttctccctttctggtgaattcaaa
aatataacagttcgtgaggaagaaaaattagaactgcagaaactgatggaaagagttcca
attccaatcaaggaaagtatggaagagcctagtgctaaagttaatgtacttcttcaagca
tacataagccaattgaaacttgaaggatttgccttaatgtccgatatggtttatgttact
cagtcagccgctaggttgatgagagctatatttgaaatcgttttgcacagaggatgggcc
cagttggcagataaatctctcgctttatgcaaaatgattgataagagaatgtggcaatca
atgtctcctttgaggcagttcaggaaaatgccagaagaaattgtaagaaagattgagaaa
aaaaatttcccttgggaaagactttacgatctaggtcctaatgaaataggagaattgatt
cgtgtgcctaaattaggcaaaaccatacacaaatacgttcatcagttccccaaactggag
ttatccacgcacattcaaccaataaccagagctatgttaaaagtggaattaacaatcacc
ccagattttcaatgggacgataaactacatggtcaatctgaagcgttttggatcctggtg
gaagatgtggattctgaagtgatcttgcatcacgaatatttcttgcttaaatcaaagtat
tgtcaagatgaacatctcgtaaaattctttgttccaatctttgaacctctacctccgcaa
tattttttgaggatagtttcagaccgttggataggggctgaaacacaattgccaatctca
ttcaggcatttgattttaccagaaaagaatttcccaccgacggatctacttgatctccaa
ccactacccattactgcactcagaaatgataaatacgaatcattgtataaaaataaattt
ccacagttcaatcctatccagacacaagttttcaattcggtttacaacagtgatgataac
attttcattggtgcacccactggttctggtaaaagtaccattgccgaatttgctatttta
aggttattcgaaaaaaatgcagagggtagatgtgtatatcttgtacctaaggatgcttta
gcggaactgatttttgctgattggcataataaattcactcaattattgggtaagaaagtt
gtattacttactggagaaacaggcacagatcttaaattattagcaaaaggacaaattatt
atcacaacagcagaaaaatgggatgttctctccagacgttggaaacagagaaaaaatgtg
caaaatatcaatttgttcatagttgatgaactgcatttagttggagggcaggacggtcct
attattgaagtggtttgttcaagaatgaggtatatatcatcgcaaatcgataagcccata
agaatgattgctttgagtgcatctttaactgactacagagatgtagccgaatggttagga
tgcaacactaatgctactttcaacttcttaccaagtgttaggccagtacctctggaactc
catgtgaaaggcttcaatataacacataacgcttcccgattgatttcaatggctaaacct
gtttacaatgccatttcaagatacagtccgcataaaccaattattatttatgttcctacc
cggaaacaagccagaataactgctattgatttgctaacaagtgcttctgctgaaggacag
cctaacaggttcttccatgctgatgaagaagacatcaagccatttttggacaggatgtct
gacaaaactttgagggaaacgttatcacaaggagtagcatatatgcacgaaggtctctca
gctagtgacttgagattggtggaacaactatttgattcaggtgctgttcaagtagcagtt
ataacgagagatttatgttggacagtaaatatatttgcacatctggttattatcatggat
gtacagtactatgatggaaaaacccacacttacgaagattatcctattaccgatgtatta
caaatggtaggaagggccaatagacctctggaagatgatgatgccaagtgtgtactcatg
tgccagaattcgaagaaggaattcttcaaaaagtttttgtgtgatccattaccagtagag
agccatttagatcacagattaccagatcatttcaatgcagaaattgtcaccaaaactatt
gagaacaaacaagatgcagttgattatttgacatggaccttcctctacagaagacttact
caaaatccaaactattacaatcttcaaggagtaacccacagacatctttctgatcatctc
tcagaattggttgaaaatacgctgaatgatctggagcagtctaaatgtgtcagcattgag
gatgaaatggattgtattcctatgaacttaggaatgattgcagcatattattatatcaat
tacactaccattgaactattcagcctttcactaaatagcaaaaccaaaatacggggtctc
ttggaaattatatcttcagctacagagtacgaagacctctccttgagacatagggaagag
agcattctacgagagctctcatataaacttcccaataaactaaccagttcctcaggtggc
tccccaaaattcaatgacccccatataaaaaccaaccttctgcttcaagctcacctttgc
agattacaacttagtgcagaactgcaaggagacactgaaaatgtgttgaataaatccatt
cgacttatacaaacttgtgtcgatgtactgagttccaatgggtggttatcacctgccgta
gccgctatggaactagcacaaatggtcacacaagctatgtggagcaaagattcatatcta
aaacaattgcctcatttcaccaatgaaataatcaagaggtgcactgataagggggtagaa
acagtttttgacataatggaactggaagacgatgatcgagcaaaactacttcaattaagt
gatgcacaaatggcagatgtggctaggttttgtaacagatatcccaatattgagttaaca
tacgaagtagctgataaggataatatccactctggttcttcagttcatgtaaatgtacag
ttagaaagagaagatgaagttaatgggccagttattgctccattctttccacagaagcga
gaagaaggctggtgggtggttataggagaccccaaaacaaattctcttctttcaatcaaa
agattgacccttcagcagaaagccaaagtcaagctagattttgttgctcccagtccagga
agtcataactatactctatattttatgagtgatgcttacttaggatgtgatcaagagtac
aaatttagtattgatgttggtgactttgaatctagtggaagtgattccgattag
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integrated database retrieval system
