Harmonia axyridis (harlequin ladybird): 123680423
Help
Entry
123680423 CDS
T10650
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
haxr Harmonia axyridis (harlequin ladybird)
Pathway
haxr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123680423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxr03019
]
123680423
03041 Spliceosome [BR:
haxr03041
]
123680423
03009 Ribosome biogenesis [BR:
haxr03009
]
123680423
03016 Transfer RNA biogenesis [BR:
haxr03016
]
123680423
Enzymes [BR:
haxr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123680423
Messenger RNA biogenesis [BR:
haxr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123680423
Spliceosome [BR:
haxr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123680423
Complex C
U4/U6.U5 tri-SnRNP related factors
123680423
Ribosome biogenesis [BR:
haxr03009
]
Eukaryotic type
Pre-60S particles
Helicases
123680423
Transfer RNA biogenesis [BR:
haxr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123680423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
HTH_43
DUF3349
Motif
Other DBs
NCBI-GeneID:
123680423
NCBI-ProteinID:
XP_045474274
LinkDB
All DBs
Position
5:7341788..7352249
Genome browser
AA seq
1005 aa
AA seq
DB search
MDIDDLFDCFNQVTKLEVAKKSKGVKRSKTNNSDDHNTSKKTKLDNDEEELEQFKQSITE
DLKNRILVYSIDTIESCSHEAAYPSNQAISPLVPAQGEPAKKYKFVLDPFQKESILCIEN
NQSVLVSAHTSAGKTVIAEYAIALCLKNKQRVIYTSPIKALSNQKYREFNDEFGDVGLMT
GDVTINPTASCLIMTTEILRNMLYKGSDVIREVAWIIFDEIHYMRDKNRGVVWEETLIML
PDNAHFVFLSATIPNAKQFIQWIAHIHKQPCHAVYTDYRPTPLQHYLFPAGGCGIHMIVD
ENGTFQEDNFNGAMAELQNAGDAAKGDQKGRRGGVRDKDPTQTDIYKMIKMTVERNFAPV
IVFSFSKKDCELYAKQMTKMDFNTTTEKLAVDEVFNNAIQVLSEEDQDLPYIKHMIPLLR
RGIGVHHGGLLPVIKETVEILFGEGLIKVLFATETFSMGLNMPARTVIFTDMRKYDGQRH
RWVTSGEYIQMAGRAGRRGLDDKGIVISMINEKVPSAACRDIIKGSPDPLNSAFHLSYNM
VLNLLRVEVINPDYMLEKSFFQFQHQTDVPRLFEEYEAKLKHYNEVEIENEEEISSYHEL
KQQVEALYVQTRKFIQEPKVLGRFLKEGRVMKVSTPDGEYDWGVVVGCRWVKSLKKKDKK
VEIDMLLNVIRENENDVAKPALLEHKEGQMEVIPIDSTCVTHISSGRCNFSGDWKSKEIK
KMIKPWLLKLKENHPDGIPLLDPVKAMKINDPQLKEIMDQIANIEAEIKAHPFQKNPSVK
EIYEKYKDKMNCQSDLERLKSKLLEAKKILQMDELKCRKRVLRRLAYCTSADVIELKGRV
ACELSSADELLLTELLFNGLFNNLSPAEATALLSCFVCTEKSDKPPKINDALKGPFRQMQ
DIARRVAKINIECRLSIDEETYVQSFRPFLMDIVYRWCNGATFRDVIDPDFYEGSIIRCM
RRLEELLRQMVQAAKVVGNQDLEDKFNEGIRMIKRDIIFSASLYL
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggatattgatgatcttttcgactgttttaaccaagtgacaaaacttgaggttgcaaaa
aaatcgaaaggtgttaaacgatcgaaaaccaataattcagatgaccataatacctctaaa
aaaacaaaattagataatgacgaggaagaactggaacaattcaagcagagcattactgag
gatttgaaaaataggatactggtatactcaattgatactattgagtcttgctcacatgaa
gcagcttatccttccaatcaggcaatcagtccccttgtgccagctcaaggggaaccagct
aagaagtataaatttgttttagatccatttcagaaagaatctattttatgtattgaaaac
aatcaatcagttctagtttccgctcatacttctgcaggaaaaacagttattgctgagtat
gctattgcattatgcttgaaaaataaacagagagttatatatacaagcccaattaaagca
ttatctaaccagaagtacagagaatttaacgatgaatttggtgatgtaggactaatgact
ggagacgttacaatcaatccaacagcatcatgtttgatcatgaccacagagattctaaga
aatatgttatataaaggctctgatgtgataagagaagttgcttggataattttcgatgaa
atacattacatgagagataaaaatagaggagtagtctgggaagagacattgattatgtta
ccagataatgcacattttgtttttctttctgccacaattcccaatgctaaacaattcatt
cagtggatagcacatattcataaacagccttgtcatgcagtatatacagattatagacca
acaccactacaacactacttatttccagcaggtggttgtggaattcacatgattgtcgat
gagaacggcactttccaagaagataatttcaatggagctatggctgagttgcaaaatgct
ggtgatgcagcaaaaggtgatcaaaaaggaagaagaggtggggttagagataaggatccc
acgcaaacagacatttataagatgataaaaatgactgttgaaagaaattttgcgcctgtt
attgtttttagtttttcaaaaaaagactgtgagctttatgctaaacaaatgactaaaatg
gatttcaacaccacaactgaaaaactagctgttgatgaggttttcaataatgctattcaa
gttctgtcagaagaagaccaagatctgccatatatcaagcatatgatacctcttctcaga
agaggtataggtgttcatcatggagggttgcttccagttatcaaagaaactgttgagata
ttatttggagagggtcttatcaaagtgttattcgcaactgagactttttccatgggttta
aacatgcctgcaagaacagtcatctttactgatatgagaaagtacgatggacagcgacat
agatgggtaacttctggtgaatacatccagatggcaggtagagcaggtagaagaggtttg
gatgataaaggtattgtcatatctatgataaacgagaaagtgccttcagcagcctgtcgt
gatataatcaagggttcaccagatccactgaattcggcatttcatttatcctataatatg
gtgcttaatcttctaagagttgaagtaattaatccagattatatgttggagaaatcattc
tttcagtttcaacaccaaactgatgttccacgattatttgaagaatatgaagctaagttg
aaacattataatgaagtggaaattgaaaatgaagaagaaatttcttcataccacgaattg
aaacaacaggtggaagcattgtacgttcaaaccagaaaattcatacaagaaccaaaagta
ctaggacgtttcctgaaagaaggaagggtcatgaaggtatcaactcctgatggtgaatat
gattggggtgtagttgttggttgtagatgggttaaaagcctcaaaaagaaggataaaaag
gttgaaattgatatgcttctcaatgtaattcgagagaatgaaaatgacgtggcaaaacca
gctcttttggaacataaggaaggtcaaatggaagttattcccatagactcaacctgtgtc
acccatatttcatcaggtagatgtaatttctcaggcgactggaagagtaaagaaattaaa
aaaatgatcaaaccgtggctgctgaaactaaaagaaaaccatcccgatggtattccttta
cttgatcctgttaaggctatgaagatcaatgatcctcaactgaaagaaattatggatcag
attgcaaatatagaagcagagattaaagcacatccatttcaaaaaaatccatcggtgaaa
gaaatatatgaaaaatataaggataaaatgaattgccaatcagatttggaaagactcaaa
agtaaattgctggaggctaaaaaaattttacaaatggacgaactcaaatgtagaaaaagg
gtactaaggaggcttgcgtattgtacaagtgccgatgtaatcgagttgaagggccgagtc
gcttgtgaattgagcagtgcagatgagttacttctaacagaattactttttaacggctta
ttcaacaacctcagcccagcggaggcaactgctctattgagctgttttgtgtgcacagaa
aaatccgataaaccgcccaagattaatgatgctttaaaaggtcctttcagacagatgcag
gacatagcaagaagagtagccaaaattaatattgaatgtcggttatctattgatgaggaa
acatatgtgcaatcatttcgcccatttcttatggatattgtataccggtggtgtaatgga
gctaccttcagagatgtcattgacccagatttttatgaaggttctattatccgttgtatg
agacgtttagaagaactattgagacagatggtgcaggccgcaaaagtagtggggaatcaa
gatttggaagataaatttaatgaaggcatcagaatgataaaaagagatattattttctcg
gccagtttgtatttgtaa
DBGET
integrated database retrieval system
