Harmonia axyridis (harlequin ladybird): 123687351
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Entry
123687351 CDS
T10650
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
haxr Harmonia axyridis (harlequin ladybird)
Pathway
haxr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haxr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123687351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxr03019
]
123687351
03041 Spliceosome [BR:
haxr03041
]
123687351
Messenger RNA biogenesis [BR:
haxr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123687351
Spliceosome [BR:
haxr03041
]
Complex B
Other components
Prp19-related factors
123687351
Complex C
123687351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_15
TPR_8
TPR_12
TPR_10
NRDE-2
Mad3_BUB1_I
PPR
DHR-2_Lobe_A
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
123687351
NCBI-ProteinID:
XP_045482989
LinkDB
All DBs
Position
1:4758528..4761216
Genome browser
AA seq
870 aa
AA seq
DB search
MLQVLLFFDQELILLLFGKRRSARMSTANDTEPMQIEFGDEDLVFEEEILRNPHSVKHWL
RYIEHKKKSSKDELNVIYERALKQLPGSYKLWYNYLRTRRIQVKKRCITDPLYEEVNNAF
ERALVFMHKMPRIWIDYCVFLTGQCKITRTRKVFDRALRALPITQHNRIWPLYLNFVKKY
EIPETAVRVFRRYLKLFPENAEEYIDYLKNITRLDECATLLAKLVNDENFISREGKSKHQ
LWNELCELISQNPKEVVSLNVDAIIRGGLRRYTDQVGHLWNSLADYYVRSGLFERARDIY
EEAIQTVTTVRDFTQIFDAYAQFEELSLSKRMEEVAKMPNPTDDDDIDLRLARFERLMER
RLLLLNSVLLRQNPHNVKEWHERVQLYEGKPHEIINTYTEAVQTVDPKLAVGKFHTLWIE
FAKFYEKNGQIDDARLVFEKGTQVPFIKVDDLAAVWCEWSEMEIRNENYEEALRLMHKAT
TIPSRKVSYHDDTETVQNRLYKSLKLWSLYADLEESFGSFKSCKAVYDRILDLKIATPQI
IINYGLFLEEHNYFEEAFRTYEKGVSLFKWPNVYDIWNTYLMKFLKRYGGEKLERARDLF
EQCLEKCPPEFAKNIYLLYAKLEEEHGMARHAMSVYERATSAVPPSEVFEVFNIYIKRAA
EIYGISKTRQIYEKAIDVLPEDKTIEMCKRFAEMETKLGEIDRARAIYAHCSQICDPRVT
TEFWQIWKEFEIKHGNEDTMREMLRIKRSVQAMYNTQVNMMSAQMMSSVNSSAGTVADLA
PGAKDGMRLLEAKAAEMAGASSTSSGLGKIMFVRGETQGNRKDKVVNPDEIDIEDGSDES
EEEAEVPVEQQDLPTQIFGSLNVNREKTDL
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgttacaggtattattgttttttgatcaagagttgatattattattatttggaaaaagg
agaagcgccaggatgtctaccgcaaacgacacagagcctatgcaaattgaatttggcgat
gaggatttagtttttgaagaagagatactgagaaatcctcattctgtaaaacattggtta
agatatatcgaacataagaagaaatcctctaaagatgaactcaatgtaatttatgaaaga
gctttaaaacaattaccaggttcttataagctatggtataattatttgagaactcggaga
atccaagtcaagaaaagatgtatcactgatccactgtatgaagaagtcaataatgcattt
gaaagagctcttgtttttatgcataaaatgcctagaatatggattgactactgtgttttc
ctaacagggcaatgtaaaataactcgaacaagaaaggttttcgatagagcacttcgtgca
ttacctataacacaacataaccgtatttggcctttatatttgaactttgttaaaaaatat
gaaattccagaaactgctgtaagagtattcagaagatatctcaaattattcccagaaaat
gctgaagaatatattgattatctcaagaacattacaagactagacgagtgtgctacactt
ctagctaaattggttaatgatgaaaattttatatctcgtgaaggaaaatcaaagcaccag
ctgtggaatgaattatgtgaattaatatcacagaaccctaaggaagtagtatctttgaat
gttgatgctattataaggggaggattgagaagatatacagatcaggtaggtcacttatgg
aattcactagcagattattatgtccgaagtggcttattcgaaagagctcgagatatttat
gaagaagctattcaaactgtaaccacagtcagagattttacccaaatatttgatgcttat
gcccaatttgaagaattaagtttaagcaaaagaatggaggaggttgctaaaatgccaaat
ccaactgatgatgacgatatagatttaagattagcaagatttgaacgtttaatggaaaga
cgattacttttattgaattcagtgttacttagacaaaatccacacaatgtaaaagaatgg
catgaaagagtacaattatatgaagggaaaccacatgaaataatcaatacatatactgaa
gcagtgcaaacagtagacccaaaattggctgtaggcaaattccatacattatggatagag
ttcgccaagttttatgaaaaaaatggtcaaattgatgatgctagactcgtgttcgagaaa
ggaacccaagtgccttttattaaagttgatgatttagcagctgtttggtgcgagtggtct
gaaatggaaattaggaacgaaaactacgaagaagcgttgagactgatgcacaaagcaacc
actataccctccagaaaagtttcatatcacgatgataccgaaactgtacagaatcgtctg
tacaaatcactcaaattatggtcgctttatgcggatctggaagaaagttttggttctttt
aaatcctgtaaagctgtgtatgacagaattctcgatttgaaaatcgctacacctcaaatt
atcataaactatggtttgttcctggaagaacataattatttcgaagaagcatttagaaca
tacgaaaagggggtttcgttgttcaaatggccgaatgtttatgatatatggaatacgtat
ttgatgaaattcttgaagaggtacggcggtgagaaactggaaagagccagagatttgttt
gagcaatgcttggagaaatgtcctccggaattcgctaagaacatctatttgttatacgct
aaacttgaagaagaacacggtatggctagacatgcgatgagtgtgtatgaaagagccaca
agtgccgtaccaccatctgaagtgttcgaggtcttcaatatctacataaaacgagcggca
gaaatatacggcatatcaaaaaccaggcaaatctacgagaaggcaatagacgttttaccc
gaggataaaacgattgaaatgtgcaagagattcgcagaaatggagacaaagcttggagaa
atagatagagcaagagccatctatgctcactgcagtcaaatatgcgaccctcgggtaaca
acggagttttggcaaatatggaaagagttcgaaatcaagcatggtaatgaagacacaatg
agagaaatgttgaggataaagagaagtgtccaagccatgtacaatactcaagtgaatatg
atgtctgcacaaatgatgtcatcggtgaacagttcagcaggcacagtggccgatttagca
cctggtgctaaggatggcatgcgattattagaggctaaagcggctgaaatggcaggagca
tcatccaccagttcgggtcttggtaaaatcatgtttgttaggggagaaactcaaggaaat
agaaaagacaaggtagtcaatcctgatgaaattgatatagaagatggaagcgatgagtca
gaggaagaagcagaagtaccagttgaacaacaggacctacctactcagatatttggaagt
ttaaatgtcaatcgtgaaaaaactgatttgtaa
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