Halorussus vallis: NGM07_03130
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Entry
NGM07_03130 CDS
T09372
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
haxy
Halorussus vallis
Pathway
haxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NGM07_03130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxy03019
]
NGM07_03130
Messenger RNA biogenesis [BR:
haxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NGM07_03130
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
USZ76328
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Position
582261..583613
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQCTAVRAGEDVVIFDMGLNLSKVLLHDNVETEKLHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYNAPVVATPFTIELVKQQIQGEQK
FGVENDLIKMDPGETMSIGDSGQVELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDH
TPVLGDPIDMKRFREIGREGEGVLAYIEDCTNAGRKGRTPSEAVARRHLKDVMTSIEDYD
GGIVATTFSSHIARVKSLVEFAHDIGREPVLLGRSMEKYSGTAERLNFVDFPENMGMFGH
RKSVDRTFKRIMKEGKENYLPIVTGHQGEPRAMLTRMGRGETPYELDNGDKVLFSARVIP
EPTNEGQRYQSERLLKMQGARIYDDIHVSGHLREEGHYQMLDALQPQNVIPAHQDMKGFA
PYVDLCENMGYQLGRDLHVTRNGNLIQLVE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaattgcaaccatcggcggttacgaagaagtcggacggcagtgtactgcc
gttcgcgcgggcgaggacgttgtcatattcgacatggggctgaacctctcgaaggtactg
ctccacgacaacgtcgagaccgagaaactgcacagtctggacctcatcgacatgggggcg
attccggacgaccgcgtaatgagcgacctcgaaggcgacgtgcaggccatcgtcccgact
cacggtcacctcgaccacatcggcgccatctcgaaactggcccaccggtacaacgcgccg
gtcgtcgccacgcccttcaccatcgaactggtcaaacagcagatacagggcgagcagaag
ttcggcgtcgagaacgacctgataaagatggaccccggcgagacgatgtccatcggcgac
tccggccaggtcgaactggagttcgtcaacgtcacccactccatcatcgacgccatcaac
ccggtgctccacacgcccgagggcgcggtcgtctacggcctcgacaagcgcatggaccac
acgcccgtgctgggcgaccccatcgacatgaagcggttccgcgagatcggccgcgagggc
gagggcgtcctggcgtacatcgaagactgcaccaacgcgggccggaagggccgcaccccc
agcgaggcggtggctcggcgccacctcaaggacgtgatgacctccatcgaggactacgac
ggcggcatcgtggcgacgacgttctccagccacatcgcccgcgtcaagagcctcgtcgag
ttcgcccacgacatcgggcgcgaaccggtgttgctcggccggtcgatggagaagtactcc
ggcaccgccgagcgactgaacttcgtcgacttccccgagaacatggggatgttcggccac
cgcaagtcggtcgaccggaccttcaagcgcatcatgaaggagggcaaggagaactacctg
cccatcgtcaccggccatcagggcgaaccccgcgcgatgctcacccggatgggccgcggc
gagacgccgtacgaactcgacaacggcgacaaggtcctcttctcggcgcgggtgattccg
gagccgaccaacgagggccagcgctaccagtccgagcgcctcctcaagatgcagggcgcc
cgcatctacgacgacatccacgtctcgggccacctccgcgaggagggccactaccagatg
ctcgacgcgctccagccccagaacgtcatcccggctcaccaggacatgaagggcttcgcg
ccctacgtcgacctgtgtgagaacatgggctaccaactgggtcgggatctgcacgtgacc
cgaaacggcaatctcatccaactcgtcgagtaa
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