Halorussus vallis: NGM07_05995
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Entry
NGM07_05995 CDS
T09372
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
haxy
Halorussus vallis
Pathway
haxy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
haxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NGM07_05995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxy03019
]
NGM07_05995
03009 Ribosome biogenesis [BR:
haxy03009
]
NGM07_05995
04131 Membrane trafficking [BR:
haxy04131
]
NGM07_05995
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
haxy04147
]
NGM07_05995
Messenger RNA biogenesis [BR:
haxy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NGM07_05995
Ribosome biogenesis [BR:
haxy03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NGM07_05995
Membrane trafficking [BR:
haxy04131
]
SNARE
SNARE associated proteins
Others
NGM07_05995
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NGM07_05995
Exosome [BR:
haxy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NGM07_05995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_5
AAA_14
AAA_22
AAA_33
NPHP3_N
RNA_helicase
AAA_7
nSTAND3
AAA_25
AAA_28
DUF815
Mg_chelatase
AAA_3
ABC_tran
AAA_lid_PRS2_C
IstB_IS21
NB-ARC
Parvo_NS1
AAA_24
AAA_18
AAA_30
Sigma54_activat
AAA_17
TsaE
AAA_11
ATPase
AAA_19
ATPase_2
PhoH
bpMoxR
SLFN-g3_helicase
Zot
HJURP_C
Histidinol_dh
Motif
Other DBs
NCBI-ProteinID:
USZ76877
LinkDB
All DBs
Position
1152386..1154650
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRRSMQELGVENGDYIVIEGREQGRAVARVWPGYPEDEGH
GVVRIDGQLRQEAGVGIDDKVTIEKADVKPANSVTIALPQNLQIRGNIAPHVRDKLSGQA
ITQGQNVPFGFGLMGMGSGQSIPLKIANTDPSGTVVVTDSTNIDISERPAEEIASGGASG
GEGAPSVTYEDIGGLEGELEQVREMIELPMRHPELFSRLGIDPPKGVMLHGPPGTGKTLM
AKAVANEIDAHFQTISGPEIMSKYYGESEEQLREVFEEAEQNAPAIVFIDELDSIAPKRE
EAGGDVERRVVAQLLSLMDGLEERGEVTVIAATNRVDAVDPALRRPGRFDREIEIGVPDR
DGRLEIMQVHTRGMPLADGIDLEEYADNTHGFVGADLENLAKEAAMNALRRIRPEIDLES
EEIPADVLDQLQVTEGDFKDALKGIEPSALREVFVEVPDVTWEQVGGLEDTKERLRETIQ
WPLEYPEVFDALDMQAAKGVLLYGPPGTGKTLMAKAVANESDSNFISIKGPELLSKWVGE
SEKGVREVFSKARENAPTVVFFDEIDSIATERGSGQGGGSQVSERVVSQLLTELDGLEEL
EDVVVIATSNRPDLIDNALLRPGRLDRHVHVPVPDEDARRAIFEVHTRNKPVADDVDLDW
LASETQGYVGADIEAVTREASMAASREFIHSVDSEEIGDSVGNVRISREHFEHALEEITP
SVTEQVRERYDEIEERFDTAEPEAEQDQLGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaactgtcaagccgttaaaacagaaggacgcgggtcgcggactcgccgccgtc
gaccgccggtcgatgcaagaactcggcgtcgagaacggcgactacatcgtcatcgagggg
agagagcagggccgagccgtcgcgcgggtctggcccggctaccccgaggacgagggccac
ggcgtcgtccgcatcgacggccaactccgccaggaggccggcgtgggcatcgacgacaag
gtcaccatcgagaaggccgacgtcaagcccgccaactccgtgaccattgcgctcccgcag
aacctccagattcgcgggaacatcgcgccccacgtccgcgacaagctcagcggacaggcc
atcacccagggccagaacgtcccgttcggcttcgggctgatggggatgggttcggggcag
tcgattcccctgaagatcgccaacaccgaccccagcgggacggtcgtcgtgaccgactcg
accaacatcgacatcagcgagcgccccgccgaggagatcgcctcgggcggcgccagcggc
ggcgaaggcgcgccgagcgtgacctacgaggacatcggcggcctcgaaggggaactcgaa
caggtccgggagatgatcgagctcccgatgcgccaccccgagctcttcagccggttgggc
atcgacccgccgaagggcgtgatgctccacggaccgccgggcacgggtaagaccctgatg
gcgaaggccgtcgccaacgagatcgacgcccacttccagaccatctcgggccccgagatc
atgtcgaagtactacggggagtccgaagagcagctccgggaggtgttcgaggaggccgag
cagaacgcgccggctatcgtcttcatcgacgaactcgactccatcgcgcccaagcgcgag
gaggccggcggcgacgtggaacgccgcgtcgtggcccagttgctctcgttgatggacggt
ctcgaagagcgcggcgaagtcaccgtcatcgccgccacgaaccgggtcgacgcggtcgac
cccgcgctccggcgacccggccgcttcgaccgcgagatcgagatcggcgtcccggaccgg
gacggtcgcctcgagatcatgcaggtccacacccgcggcatgccgctggccgacggcatc
gacctcgaggagtacgccgacaacacccacggcttcgtcggcgccgacctggagaacctc
gccaaggaggcggcgatgaacgcgctccggcgcatccggcccgaaatcgacctcgaatcc
gaggagattccggccgacgtgctcgaccaactccaggtcaccgagggcgacttcaaggac
gcgctgaagggcatcgaaccctccgcgctccgcgaggtgttcgtcgaagtccccgacgtc
acctgggaacaggtcggcggattggaggacaccaaagagcgcctgcgcgagaccatccag
tggcccctggagtaccccgaggtgttcgacgcgctggacatgcaggccgccaagggcgtg
ctgctgtacggcccgcccggcacgggcaagaccctgatggcgaaggccgtcgccaacgag
agcgacagcaacttcatctccatcaagggtcccgaactgctgagcaagtgggtcggcgag
tccgagaagggcgtccgcgaggtgttcagcaaggcccgggagaacgccccgaccgtggtg
ttcttcgacgagatcgactccatcgccaccgagcgcggaagcggccagggcggcggctcg
caggtcagcgagcgcgtcgtctcgcagctgctgaccgaactcgacgggctggaggaactc
gaagacgtggtcgtcatcgccacctcgaaccggcccgacctcatcgacaacgcgctactg
cgcccgggtcggctggaccgccacgtccacgtgccggtgcccgacgaggacgctcggcgc
gccatcttcgaggtccacacccgaaacaagccggtggccgacgacgtcgacctcgactgg
ctcgccagcgaaacccagggctacgtcggcgccgacatcgaggcggtcacccgcgaggcc
tcgatggccgccagccgggagttcatccacagcgtggactccgaggagatcggcgatagc
gtcgggaacgtccgcatcagccgggagcacttcgagcacgcgctcgaagagatcaccccg
agcgtgaccgagcaggtccgcgagcgctacgacgagatcgaagagcgcttcgacacggcc
gaacccgaggccgaacaggaccaactcggccggacgttccaatag
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