Halorussus vallis: NGM07_06025
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Entry
NGM07_06025 CDS
T09372
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haxy
Halorussus vallis
Brite
KEGG Orthology (KO) [BR:
haxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haxy03016
]
NGM07_06025
Enzymes [BR:
haxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NGM07_06025
Transfer RNA biogenesis [BR:
haxy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NGM07_06025
Prokaryotic type
tRNA splicing ligases
NGM07_06025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
USZ76883
LinkDB
All DBs
Position
1160020..1161477
Genome browser
AA seq
485 aa
AA seq
DB search
MDTYEVGDVTLRKVREYVWEIPREGDMRVPGRVLASEPLLDQIADDKTLEQLRNSTHLPG
VQKYNVCMPDGHQGYGFPVGGVAGIDTEEGCISPGAVGYDINCGVRMMRTNLTYDDVRGR
EEELVDALFANVPSGLGGGGVVEGDIDTVEAILDRGMEWALEEGWAVPEDLAHCEDEGVR
HDSDPAKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDTYLDDVADAYGLEEDQIVVLIHC
GSRGLGHQVCTDYLRDIEKSHSDLLAKLPDKELAAAPAGSRLAEDYYDAMCAAINFAWVN
RQLIMHRVRQVFEKVFGRDWESMEMDLLYDVAHNIAKKETHDVDGEERELYVHRKGATRA
FPAGHPEVPGAYLDVGQPIIIPGSMGAGSYVLRGGEASMDLTFGSTAHGAGRVMSRTQAK
QDFWGGDVQDELEQQHIYVKAQSGATVAEEAPGVYKDVDEVVKVSDALGIGDKVARTYPV
CNIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggacacctacgaggtcggcgacgtcacgctccggaaggtgcgggagtacgtctgggag
attccgcgcgagggcgacatgcgcgtccccgggcgggtgctcgccagcgaacctcttctc
gaccagatcgccgacgacaagacgctcgaacagctcagaaactcgacccacctgccgggg
gtccagaagtacaacgtctgcatgcccgacggccaccagggctacggcttcccggtcggc
ggcgtggccggcatcgacaccgaggagggctgcatctcgccgggcgccgtgggctacgac
atcaactgcggcgtcaggatgatgcggacgaacctgacctacgacgacgtgcggggccgc
gaggaggaactcgtcgacgccctgttcgccaacgtcccgtcgggactcggcggcggcggc
gtggtcgagggcgacatcgacaccgtcgaggccatcctcgaccgcgggatggagtgggcc
ctcgaagagggttgggccgtcccggaggacctcgcccactgcgaggacgagggcgtccgc
cacgacagcgaccccgcgaaggtgtcccagaaggccaaggaccgcgggaagaaccagatc
ggaagcctcgggtcgggcaatcacttcctcgaagtccagcgcgtgaccgacacctacctc
gacgacgtggccgacgcctacggcctcgaggaggaccagatcgtcgtgctcatccactgc
ggcagtcgggggctgggccaccaggtctgcaccgactacctccgggacatcgagaagtct
cactcggacctgctcgcgaagttgcccgacaaggaactcgcggccgcgcccgccggaagc
cgactcgccgaggactactacgacgcgatgtgcgcggccatcaacttcgcgtgggtgaac
cgacagctcatcatgcaccgggtccggcaggtgttcgagaaggtgttcggccgcgactgg
gagtcgatggagatggacctgctgtacgacgtggcccacaacatcgccaagaaggaaacc
cacgacgtggacggcgaggagcgagaactctacgtccaccggaagggcgcgacgcgggcg
ttccccgccggccaccccgaggtgcccggcgcgtacctcgacgtgggccagcccatcatc
atccccggaagtatgggcgcggggagctacgtcctccggggcggcgaggcgtcgatggac
ctcaccttcggctcgaccgcccacggcgcggggcgggtcatgagccgaacccaggccaag
caggacttctggggcggcgacgtccaggacgaactcgaacagcaacacatctacgtcaag
gcccagagcggcgcgaccgtcgccgaggaagcgccgggagtctacaaggacgtcgacgag
gtcgtgaaggtttccgacgcgctcggtatcggcgacaaggtagcccgaacctaccccgtc
tgcaacatcaaggggtag
DBGET
integrated database retrieval system
