Halorussus vallis: NGM07_06375
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Entry
NGM07_06375 CDS
T09372
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
haxy
Halorussus vallis
Pathway
haxy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
haxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NGM07_06375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxy03019
]
NGM07_06375
03009 Ribosome biogenesis [BR:
haxy03009
]
NGM07_06375
04131 Membrane trafficking [BR:
haxy04131
]
NGM07_06375
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
haxy04147
]
NGM07_06375
Messenger RNA biogenesis [BR:
haxy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NGM07_06375
Ribosome biogenesis [BR:
haxy03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NGM07_06375
Membrane trafficking [BR:
haxy04131
]
SNARE
SNARE associated proteins
Others
NGM07_06375
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NGM07_06375
Exosome [BR:
haxy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NGM07_06375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
AAA_16
RuvB_N
AAA_5
AAA_22
TIP49
AAA_33
AAA_2
NPHP3_N
AAA_14
nSTAND3
RNA_helicase
AAA_28
IstB_IS21
Mg_chelatase
Sigma54_activat
AAA_7
AAA_18
ABC_tran
DUF815
ATPase
AAA_17
AAA_3
NB-ARC
Parvo_NS1
AAA_30
AAA_24
TsaE
AAA_11
KAP_NTPase
SLFN-g3_helicase
Vps4_C
NACHT
ResIII
PhoH
IPT
DUF6985
Motif
Other DBs
NCBI-ProteinID:
USZ76951
LinkDB
All DBs
Position
1224393..1226618
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGDTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVEIRKADAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPDGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPAIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDET
GREEILQIHTRGMPLSDDVALDSLANDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIVKREDFNGALNEVEPSAMREVLVELPKISWDDVGGLEQAQQEVKESVEW
PLSSPEKFRRMGINPPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDSLAPSRSQEVGSNVSERVVNQLLTELDGLEEKGDV
MVIGATNRPDMIDPALIRSGRFDRLVMIGQPDQEGREQILKIHTDDTPLSADVSLRELSE
VTDGYVGSDLESIAREAAIEALREDDDATEVEMRHFRQAMENVRPTITEDLMDYYEQMKD
EFKGGTSSPDQGRRGGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttcaactagaggtggcgaaggcgtacccgaacgactcggggcgcggcatc
gcccgcctcgaccccgatacgctgcttcacctgaagctcagcccgggcgatatcatcgag
atcgagggcggtgacaccaccgccgcgaaggtgtggcgcgcagaccggcaggactggaac
accgacaccgtccgcatcgacggtttcacgcgtcagaacgcggacgtcggcatcggcgag
cgcgtcgagatccggaaggccgacgctgagaaggccgacaaactcgtcctcgcgccgccc
gaggaggccagcgtccagttcggctccgacgccgcgggcatggtcaagcgccagattctc
aagcgccccgtggtcgagcgcgacatcgttcccgtgatgtcgagcacgaaccacccgttc
atgcgctcgcccggccaggcgattccgctcatcgcggtcgaaaccgagccggacggcgtc
tgcctcatcaccgaggacaccgaggtcgaactgcgcgaggagcccatctcgggcttcgag
aagaccggcggcggcatcacctacgaggacatcggcggcctcgagaacgagattcagcgc
gtccgggagatggtcgaactcccgatgaagcacccccagatattcaagaaactgggcatc
gagccgccacagggcgtgctgctccacggcccgcccggcacgggtaagacgctgctcgcc
aaggcggtcgccaacgagacctccgcgagtttcttctccatcgcggggcccgagatcatc
tcgaagtactacggcgagtccgaacaacaactccgtgagatattcgaggacgccagcgag
gagtcgccggccatcatcttcatcgacgaactcgactccatcgcgcccaagcgcgaggac
gtgaccggcgaggtcgaacgtcgcgtcgtcgcccagttgctgacgatgatggacggcctg
gaggctcgcgggcaggtcatcgtcatcgcggcgacgaaccgggtcgactcggtcgacccc
gcgctccggcgacccggccgcttcgaccgcgagatcgaaatcggcgtcccggacgagacg
ggccgcgaggagatactccagattcacacccgcgggatgccgctgtcggacgacgtggcg
ctggactcgctggccaacgacacccacggcttcgtcggcgccgacatcgagagcctgacc
aaggaggcggcgatgaaggcgctccggcgctacctccccgagatcgacctcgacgaggag
gacatcccgccgagcctcatcgaccggatgatcgtcaagcgcgaggacttcaacggcgcg
ctcaacgaggtcgaaccctcggcgatgcgcgaggtcctcgtcgaactcccgaagatatcc
tgggacgacgtcggcggcctcgaacaggcccaacaggaggtcaaagagagcgtcgagtgg
cccctctcctcgcccgagaagttccggcggatgggcatcaacccgccgagcggcgtgctg
ctgtacggcccgcccggcacgggcaagaccctgatggcgaaggcggtggccaacgaaacc
aacgccaacttcatcagcgttcgcggcccgcaactgctgtcgaagtgggtcggcgagtcc
gagaaggccatccgccagacgttccggaaggcccgccaggtctccccgaccatcatcttc
ttcgacgaactggacagtctcgcgccgtcccggagccaggaggtcggctcgaacgtctcc
gagcgcgtggtcaaccagttactgaccgaactcgacggtctggaggagaagggcgacgtg
atggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcgctcatccgctcgggc
cggttcgaccgcctcgtgatgatcggccagccagaccaggagggccgcgagcagatcctg
aagattcacaccgacgacacgccgctgtcggccgacgtgagcctgcgggaactgtccgag
gtcaccgacggctacgtcggtagcgacctcgagtccatcgcgcgggaggccgccatcgag
gcgctccgcgaggacgacgacgccacggaggtcgagatgcgccacttccgccaggcgatg
gagaacgtccgaccgaccatcaccgaggacctgatggactactacgagcagatgaaagac
gagttcaagggcggcacgtccagccccgaccagggtcgccgcggcggccgtatcggtttc
cagtag
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