KEGG   Halorussus vallis: NGM07_18925
Entry
NGM07_18925       CDS       T09372                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
haxy  Halorussus vallis
Pathway
haxy03030  DNA replication
haxy03410  Base excision repair
haxy03420  Nucleotide excision repair
haxy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haxy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NGM07_18925
   03410 Base excision repair
    NGM07_18925
   03420 Nucleotide excision repair
    NGM07_18925
   03430 Mismatch repair
    NGM07_18925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:haxy03032]
    NGM07_18925
   03400 DNA repair and recombination proteins [BR:haxy03400]
    NGM07_18925
Enzymes [BR:haxy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NGM07_18925
    6.5.1.6  DNA ligase (ATP or NAD+)
     NGM07_18925
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NGM07_18925
DNA replication proteins [BR:haxy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NGM07_18925
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NGM07_18925
DNA repair and recombination proteins [BR:haxy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NGM07_18925
   NER (nucleotide excision repair)
    Other NER factors
     NGM07_18925
   MMR (mismatch excision repair)
    Other MMR factors
     NGM07_18925
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: USZ75492
LinkDB
Position
3727840..3729582
AA seq 580 aa
MEFGEFADAAAEIEELSADTEIIERVTELLSRADAESDGAAGEDSATDELPVLARFVQGR
VFPAWSSTTLDIGPNYCYEAIARAAGTNVSAADVESRLAEVGDIGEVAAGYDFGGQQGLA
AFGSGGGSEDLTVAEVAEELATLAAAEGSGSQDKKIDLLFALFNRASSREARYLARLVLS
EMRIGVGEGTVRDAIAAAFDVPVESVERALQVSNDYGEVARVARDAGEAGLDEMDLEVGR
PVQAMLAQAGTVSDALDDWEETAVEWKFDGARVQLHYDPDGLARSADDDASSSAERTVAV
FSRNMEDVTDALPEVVEYVEEHLDVPAILDGEVVATDDDGDPLPFQEVLRRFRRKHDVAR
AREAVELDLFAFDCLHADGDDLLRAPLTERHDRLEDVLSGGVSALWVSDDPDQIAEIEEN
ALDAGHEGIMLKNPDSTYSPGRRGKNWLKRKPDVETLDLVVTGAEWGEGRRASFLGTFLL
SARTDDGDFETLGKVATGITDEELAELTELLEPHIRTQDGQDVEIAPEVVFEVGYEEIQE
SPTYSSGYALRFPRFLGVRDDKTPESADSLSRVERLADAQ
NT seq 1743 nt   +upstreamnt  +downstreamnt
atggagttcggggagttcgccgacgcggcggccgaaatcgaggaactgagcgccgacacg
gagataatcgagcgcgtgaccgaactgctgtcgcgcgccgacgccgagagcgacggcgcc
gcgggcgaggacagcgcgaccgacgaactcccagtgctcgcgcggttcgtccagggccga
gtgttccccgcctggtcgtcgacgacgctcgacatcgggccgaactactgctacgaggcc
atcgcgcgggcggccgggacgaacgtctcggcggccgacgtcgagtcccgactcgcagag
gtcggcgacatcggcgaggtggccgcgggctacgacttcggcggccagcaggggctggcg
gcgttcggttcgggcggcgggagcgaggacctcacggtcgccgaagtcgccgaggaactg
gcgacgctcgccgccgccgaggggtcggggagccaggacaagaagatagacctgctgttc
gcgctgttcaaccgcgcgagttcgcgggaggcgcgctacctcgctcgactcgtgctctcg
gagatgcgcatcggcgtcggcgagggcaccgtcagggacgccatcgcggccgccttcgac
gtgccggtcgagtcggtcgagcgcgccctccaggtgtcgaacgactacggcgaggtcgcc
cgcgtcgcgcgcgacgcgggcgaggccggcctcgacgagatggacctcgaagtcggtcgg
ccggtccaggcgatgctcgcgcaagccggcaccgtgagcgatgcgctcgacgattgggag
gagactgcggtggagtggaagttcgacggtgcgcgcgtccaactccactacgaccccgac
ggactcgcccgctcggccgacgacgacgcgtcgtcgtcggccgagcgcacggtcgcggtc
ttctcgcgcaacatggaggacgtgaccgacgcgctccccgaggtcgtcgagtacgtcgag
gagcacctcgacgtgccggccatcctcgacggcgaggtggtcgccaccgacgacgacggc
gaccccctgccgttccaggaggtgctgcgacggttccgccggaagcacgacgtcgcccgc
gcccgcgaggcggtcgaactcgacctgttcgcgttcgactgcctccacgccgacggcgac
gacctgctccgcgcacccctcacggagcgccacgaccgcctcgaagacgtcctctcggga
ggcgtgtcggcgctgtgggtttccgacgaccccgaccaaatcgccgagatagaggaaaac
gccctcgacgcgggccacgagggcatcatgctcaagaatcccgactcgacgtactcgccg
ggccgccgcgggaagaactggctcaagcgcaagcccgacgtcgagacgctggacctcgtg
gtcacgggcgccgagtggggcgagggccggcgggcgagctttctaggaaccttcctgctg
tcggctcgaaccgacgacggcgacttcgagacgctcggaaaggtcgccaccggcatcacc
gacgaggaactcgcggagttgaccgaactgctcgaaccgcacatccggacgcaggacggc
caggacgtcgagattgctcccgaggtcgtcttcgaggtcggctacgaggagatccaggag
tcgccgacctactcgtcgggctacgcgctccggttcccccggttcctcggcgttcgcgac
gacaagacgcccgagagcgccgattcgctttcgcgagtcgagcgactcgcagacgcccag
taa

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