Haemophilus sp. oral taxon 036: C3V42_01115
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Entry
C3V42_01115 CDS
T05707
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hay
Haemophilus sp. oral taxon 036
Pathway
hay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3V42_01115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hay03400
]
C3V42_01115
DNA repair and recombination proteins [BR:
hay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3V42_01115
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C3V42_01115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
UvrD-helicase
DUF87
AAA_22
CC2-LZ
Motif
Other DBs
NCBI-ProteinID:
AVM59316
LinkDB
All DBs
Position
222463..224502
Genome browser
AA seq
679 aa
AA seq
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MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQ
LNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASI
NDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAK
LAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIE
MMNELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDR
SRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRP
TGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL
IQTIGRAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGE
LLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEK
AATIRDQLHQLREQFVFDN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaaatcaacacaaaaccattcattctgcattccgactttcgtccctctggc
gatcagccgcaagctatcgaaaaattagctgaaaatttaactgatggtttggcgcatcaa
actttgctcggtgtaactggctcgggaaaaacgtttactattgccaacgtaattgcccaa
ttaaatcgccccgcaatgttacttgcaccgaataaaacccttgcagcccagctttatgca
gaaatgaaagccttttttccagaaaatgcggtggaatattttgtgtcttactatgattat
tatcagccagaagcctatgtgccgagcagtgataccttcattgaaaaagatgcgtctatt
aatgatcaaatcgaacaaatgcgtctttctgcgacgaaatcttttctagaacgtcgagat
actatcgtggtagcttcagtttctgcaatttatggtttgggtgatcctgatagctattta
caaatgatgttgcatttacaacaaggtgccattatcgaccaacgccaaattttagccaag
ttagcggaattgcaatatacccgcaatgatcaagcatttcagcgtggaactttccgtgtt
cgtggagaaattattgatattttccctgcggaatctgatgatcgtgcggtgcgtattgaa
ttatttgatgatgaaatcgagcgtttaagtttatttgatccgctcactggcagtagtttt
ggtgcagtaccacgttttacgatctatcctaaaactcactatgtgacaccaagagaacgt
attttagatgcgatagaaaatatcaaaaaagaactggtatcacgccgtgaatacttcatt
aaagagcacaaactgttagaagaacaacgcatcagccaacgtacccaatttgatattgaa
atgatgaatgaattgggctattgctcgggcattgaaaactattctcgctatttgtcaggc
agaaatgagggcgagccaccaccaacattattcgattatatgccctctgatgcgatttta
attattgatgaatctcatgtgactgtgcctcaaattggcggaatgtatcgtggcgaccgt
tcgcgaaaagaaaccttagtcgaatatggtttccgattaccgtcagcattggataatcgt
ccgttacgctttgaggaatttgaacgcttagctccacaaaccatctatgtttccgcaaca
ccagggccttatgaattagaaaaatcaggcagtgaaatcatcgatcaagtggttcgtcca
actggtttgcttgatccgctcattgaaattcgtccagtctcaattcaagtagatgattta
ctttccgaagctcgccaaagagcggataaaaatgagcgtgttttagtgacaacactcacc
aagaaaatggcggaagatttaacagattatttagatgaacacgggattcgtgtgcgttat
ctacattctgatattgataccgtggaacgcgtcgaaattatccgtgatttgcgtttaggc
gaatttgatgtattggttggaattaacttattacgtgaaggtttagatattccggaagtg
tctcttgtggcgattttagatgccgataaggaaggttttttacgttctgaacgttcttta
atccaaaccatcggccgagctgcacgaaacttaaatggtaaagcgattttatatgcggat
agcatcaccaaatcgatggaaaaagccattaccgaaaccaatcgtcgtcgtgaaaaacaa
accaaatacaatgaagaacatggcattgtgccacaagcattaaataagaaagtcggtgaa
ttgttagatattgggcaaggtgcaaaccaaaaagcgaaagccaataaacaacgtggaaaa
atggcggcagaaccaaccgcactttataatgcaccgaaaaatgccaaagaatatcaacaa
caaatcaaaaaactggaacaacaaatgtataaatttgcgcaagatttggaatttgaaaaa
gccgcgacaattcgcgatcaattacatcaattacgtgaacagtttgtttttgataactaa
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