Haemophilus sp. oral taxon 036: C3V42_02000
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Entry
C3V42_02000 CDS
T05707
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hay
Haemophilus sp. oral taxon 036
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hay03009
]
C3V42_02000
Enzymes [BR:
hay01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C3V42_02000
Ribosome biogenesis [BR:
hay03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C3V42_02000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
TRM5-TYW2_MTfase
MTS
RrnaAD
Methyltransf_4
Methyltransf_15
Cons_hypoth95
Methyltransf_11
Methyltransf_23
Methyltr_RsmB-F
Ubie_methyltran
DOT1
PDGF
TraH_VirB8-like
UPF0020
Motif
Other DBs
NCBI-ProteinID:
AVM59479
LinkDB
All DBs
Position
complement(421888..423204)
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AA seq
438 aa
AA seq
DB search
MVLLYTPKQKTKNVQTITADILDLDYQGLGVAKINGKTWFIENALPHEKVECRILEDKRQ
YGHATAKKWRVKSPERLAPKCAHFMRCGGCQGQHIPIEMQRKAKESALFKRLSKLQSEPI
SFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQKNTNDLITVQSCEVAEPAINYLLP
KLTALLEKFSAPRQLGHIELVVADNGVAMLLRYTKNLAEIDRTLLLKFAEQEKLMLFLQS
DEGIEQSYGDAPYYQFSDGIKLHFDIRDFIQVNRVLNERMVNTALDWLELNQRDYVLDLF
CGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAARNQIKNIEFFQADLDQSFVEQPWAR
QSFNKIVLDPPRSGAAFALNALCELKAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVI
DMFPHTGHLESITLFTTK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggttcttctttataccccaaagcaaaaaacaaaaaatgttcaaactattacggctgat
attcttgatttagattatcaaggtttaggcgtggcgaaaattaatggtaaaacttggttt
attgaaaatgccctaccgcacgaaaaagtggaatgtcgtattctggaggataaacgccaa
tatgggcatgctacggcaaaaaaatggcgagtaaaaagccctgaacgtttagcaccaaaa
tgtgctcattttatgcgttgtggtggttgtcaaggacaacatattcctattgaaatgcag
agaaaagcgaaagaatccgcattgtttaaacgattaagtaaattacagtcagagccgatt
tcatttcaacctatgatttgtggcgatgcttgggcatatcgtcgtcgtgtacgtttgagt
ttatggtttaatccaagcacaaaacaaattgagatgggctttcgtcagaaaaataccaac
gatttaattactgttcaatcttgcgaagtggcagaacctgcaattaattatttactgcct
aaattaaccgcacttttagaaaaattttcagcaccgagacagcttgggcatattgaactt
gtggtggccgataatggtgtcgcaatgttgttacgttacaccaaaaaccttgcggaaatt
gaccgcactttattgctcaaatttgctgaacaagaaaagttaatgctgtttttacaaagc
gatgaaggtattgaacaaagctatggcgatgcaccttattatcaattttctgatggcata
aaattacattttgatattcgtgattttattcaagtaaatcgtgtattaaatgaacgtatg
gtcaatacagccttggattggcttgaattgaaccaacgggattatgtgctagatttattt
tgtggcatgggaaattttacgcttcctctcgccaaacgagtaaaaagtgcggtaggaatt
gaaggcgtttttgaaatggtacaaaaagcggcgcaaaatgctgcaagaaaccaaatcaag
aatattgaatttttccaagccgatcttgaccaatcttttgttgaacaaccttgggcacgt
cagtcgtttaataaaattgtgcttgatcctccccgcagtggcgcagctttcgcgttaaat
gcgttgtgcgagttgaaagcagagaaaattttatatgtgtcttgtaatcctgcaacatta
gtgcgtgatgcggaaattttacgtgattttggctacaagattgaaaaaagtgcggtgata
gatatgttccctcatacggggcatttggaatcaataacgttattcactacaaaataa
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