Haemophilus sp. oral taxon 036: C3V42_02400
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Entry
C3V42_02400 CDS
T05707
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hay
Haemophilus sp. oral taxon 036
Pathway
hay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V42_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hay03019
]
C3V42_02400
03009 Ribosome biogenesis [BR:
hay03009
]
C3V42_02400
Enzymes [BR:
hay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V42_02400
Messenger RNA biogenesis [BR:
hay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V42_02400
Ribosome biogenesis [BR:
hay03009
]
Prokaryotic type
rRNA helicases
C3V42_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AVM59558
LinkDB
All DBs
Position
498600..500438
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AA seq
612 aa
AA seq
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MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFA
LPLLAQIDPSEKHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTATLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRDNPRSAERRGERKGYGNPQPMDLYR
IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDHTTVELPQGMPKELLQQFGKTRV
LNKQMQMSFLGAVKSDSSRGGDDFNGKRKGRGGDFRGERGRNERSNDNRGNRKFNEKSNR
SFSDKPRRDRRG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaattacttttaatgacttaggcttacctgagttcatcttaaaagctgtt
tctgacttaggttttgaaaccccttctccaattcaacaagcttgtatcccacatttgctc
agtggcaatgatgtgctaggtatggcacaaacgggtagtggtaaaaccgctgcctttgca
ctgcctttattagcgcaaatcgatccaagtgaaaaacatccacaaatgttagtgatggcg
cctactcgagaacttgctattcaagttgccgatgcgtgcgaacaatttgttaaatatgct
catggctcgcgcattgttaccttatatggtggtcaacgttatgacatccagcttcgtgca
ctaaaacaaggcgcacaagtggttgtgggtacacctggtcgtattcttgaccatattcgt
cgcggaacattaaatctttctgaacttcgttttatcgtattagatgaagcagatgagatg
ctacgcatgggtttcattgatgatgtagaaaccgtcatggcagaattaccagaaaatcac
caaacagcgttattctctgcaacaatgcctgaaccgatccgtcgtattacgaaacgtttt
atgaatgatccaaaagaagtgaagatcaaagttaataacgaaaatgccccagatatcgac
caaagttgctggtatgtgcacggcgtgcgtaaaaatgaagcccttcttcgtttcttagaa
gtggaagattttgatgcggcaattatctttgctcgcactaaaacagctactttagacatt
acagaactacttgaaaaaaatggtttccgttctgccgcacttaatggtgatatgacacaa
caactccgcgaacaaaccctcgatcgtttacgtaacggcagtttagatattgttgtggca
accgatgtggccgcacgcggtattgatattgagcgtatcagccttgtggtgaactacgac
attccgcttgatgcagaatcttatgtgcaccgaattggacgtactggtcgtgcaggccgt
tctggtcgtgctttattattcgttgagcctcgtgagcgtcgtttacttcgtaatattgaa
cacctaatgaaaaaaggtatcaatgaagtagaattgccaaatcatcttgtgttacaagaa
tgccgccgcaaaaaattcgtcgcaaaaattacgaaacaactcgagcatcacgatttagaa
caatatcgtagtttattagaagacttattcacagccgatcaagatcaagaagatattgca
gctgcaatgttaatgttgctacaaggcaaacaaaaattaattcttccaccagatccacca
atggaaaaacgtcgtcgtgaacgtaatgaacgaggtgatcgccgtgacaatccacgttca
gctgaacgtcgtggagaacgtaaaggctatggaaatccacaaccaatggatttatatcgt
atcgaagtcggtcgtgcggatggtgtagaagttcgccatatcgtgggtgcgattgctaac
gaaggtgatatcaatagccgctatattggtcatatcaaactttatgatgaccacactacc
gttgaattgccacaaggtatgccgaaagaattattgcaacaattcggtaaaacacgcgta
ttgaataaacaaatgcaaatgtctttcttaggtgctgtgaagtctgatagttctcgcggt
ggcgatgattttaatggtaaacgtaaaggccgtggtggcgatttccgtggagaacgcgga
cgtaatgaacgcagtaatgacaatcgtggaaatcgtaaatttaatgaaaaaagtaaccgc
tcttttagcgataaaccacgccgtgatcgccgagggtaa
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