Haemophilus sp. oral taxon 036: C3V42_02615
Help
Entry
C3V42_02615 CDS
T05707
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hay
Haemophilus sp. oral taxon 036
Pathway
hay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V42_02615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hay03019
]
C3V42_02615
03009 Ribosome biogenesis [BR:
hay03009
]
C3V42_02615
Enzymes [BR:
hay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C3V42_02615
Messenger RNA biogenesis [BR:
hay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V42_02615
Ribosome biogenesis [BR:
hay03009
]
Prokaryotic type
rRNA processing factors
C3V42_02615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AVM59588
LinkDB
All DBs
Position
complement(535372..538185)
Genome browser
AA seq
937 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQNRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKA
KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSL
SILRLIEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDVIVAPNEAMETP
HFSVFRLRDGEEVNELSYNLAKIHCEKDESTEESLVSRNVETTVVAEQPAVESAAVALSI
SEAAPTPVERKSNEPSLLAKIIAKIKGLFASESEENKPKNNRTSRNSNRNQRRPQDRRTS
RRPRSENNETERTEEQVRNIRERNQRRPRRNLVEESIAESAVNSTPVFEAKDEKTEQVTQ
RRQRRDLRKRVRVEDNEMAVENNENIVEQMPEVAVVELQAVQDDEKPARQNQERSERQDR
QRRTPRHLRAANNQRRRRNQEPKSPMPLFAAVASPELASGKAWVDYSTVNAQKENNFLSV
DELLEQEKTKKGFITPAMGIVVEEKSLEVKPALDFITQPANESVQKKVQESLERLNSHKP
QEMVESIESTITVNEPEIVNEPTFVRTYEFNGRLGTISSVTHTKAEMTLAKASDEMPQPF
PIIEWQDSRYYFYGKGSAGHHCAISHVYSEPTRAESE
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaaaaagaagagttgcgtgtagcgctagttgac
ggacagcgcttatttgacctggatattgaaagcccaggacatgagcaaaaaaaagcgaat
atctacaaagggaaaattactcgcgttgagccaagcttagaagcggcttttgtggattat
ggtgcagaacgtcatggttttttgccattaaaagaaattgctcgtgaatattttcccgat
gattatgttttccaaggtcgtccgaatattcgcgatatcttgagcgaaggccaagaagtt
attgttcaagttaataaggaagaacgcggaaacaaaggcgcagccttaaccacttttgtt
tctcttgcgggtagttatttggtcattatgccaaataatccgcgtgcgggtgggatctct
cgtcgtatcgaaggggatgagcgcactgaattaaaagaggcattaagttcattagatgtg
cctgaaggcgtaggcttgattgttcgtaccgctggtgtgggcaaatctccagaagagttg
cagtgggacttaaaagttttacttcaccattgggaagcaattaaacaagcatctcaaaat
cgtccagcgcctttcttgattcaccaagaaagtgatgtgattgtacgtgctattcgtgat
tatttgcgccgtgatataggcgagatccttattgatagccctaaagtgtttgagaaagca
aaagagcatatcaaacttgttcgcccagatttcatcaatcgcgtgaaactttatcaaggc
gaagtgcctcttttcagccactatcagatcgaatctcaaatcgagtcagcattccaacgt
gaagtgcgtttaccttctggcggttcaatcgttattgatgtaactgaagccttaactgct
attgatattaactccgcgcgttctacccgtggtggcgatattgaagaaactgcattgaat
actaaccttgaagcggcagatgaaattgctcgccaattacgcttgcgtgacttaggtggt
ttagtggttatcgatttcattgatatgacgccagttcgtcaccaacgtgaagtggaaaat
cgtattcgtgatgccgttcgccaagatcgtgctcgtattcaaattagccgcatttctcgt
tttggtttgttagaaatgtcgcgtcagcgtttaagtccttcattaggtgagtcttcacat
cacatttgtcctcgttgtcaaggaacaggtaaagtgcgtgataacgagtctctttccttg
tctatcttgcgtttaatcgaggaagaagcgttaaaagaaaacaccaagcaagtgcatacg
attgtgcctgtacaaattgcttcttatcttcttaacgaaaaacgtaaagcaattagcaat
attgaaaaacgtcacaatgtagatgttattgttgcgccaaatgaagcaatggaaacacct
cactttagcgttttccgtttacgcgatggcgaagaagtgaatgaattaagctataactta
gcgaaaattcactgtgagaaagatgaaagcactgaggaatctcttgtttctcgtaatgtg
gaaacaactgttgttgctgaacaacccgcagttgaaagtgcggcagtggcgctttctatt
tctgaagctgctccgactccagttgagcgtaaatcgaatgaaccgtctttgttagcgaaa
attatcgcgaagattaaaggcttgtttgcttctgaatccgaagaaaataaaccaaaaaat
aaccgcacttcgcgcaattctaatcgtaatcaacgtcgtccacaggatcgtcgaacttct
cgtcgtcctcgttctgaaaataacgaaacggaaagaaccgaagaacaagttcgtaatatt
cgtgagcgtaatcaacgccgtccgcgccgtaacttagtggaagaaagtatcgctgaaagt
gcggtaaattctacaccggtttttgaggctaaagatgaaaaaactgagcaagtgactcaa
cgccgtcaacgtcgtgatttacgtaaacgcgtgcgtgttgaagataatgagatggctgtt
gaaaataacgaaaacattgttgaacaaatgccagaagtggcggttgtcgaacttcaggcc
gttcaagatgatgaaaaaccagctcgtcaaaaccaagaacgttctgaacgtcaagatcgt
caacgtcgtactccacgtcatttacgtgcagctaataatcaacgtcgtcgccgtaatcaa
gagccaaaatcaccaatgccattatttgctgcagtggcttcacctgaattggcaagtgga
aaagcttgggtagactattcaacagtgaacgctcagaaagaaaataatttcttatctgtg
gatgaattgctcgagcaagagaaaactaaaaaaggttttatcacgccagcaatgggaatt
gttgttgaagaaaaatctcttgaagtaaaaccagcattagattttattactcagccagct
aatgaatctgtacagaaaaaagtacaagaatctttagagcgtttaaattctcataaacct
caagaaatggttgagtctattgagtcaacgattaccgtaaatgagcctgaaattgtaaat
gaaccaacctttgttcgtacttatgagtttaatgggcgtttagggactatttcttcagtt
actcatacaaaagcggagatgactttggcaaaagcgagtgatgaaatgcctcagccattc
ccaattattgaatggcaagattctcgttattatttttatggtaaagggtcagcagggcat
cattgtgcgattagccatgtatattctgagcctacccgagcagaatcagagtaa
DBGET
integrated database retrieval system
