Haemophilus sp. oral taxon 036: C3V42_05725
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Entry
C3V42_05725 CDS
T05707
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hay
Haemophilus sp. oral taxon 036
Pathway
hay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V42_05725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hay03019
]
C3V42_05725
03016 Transfer RNA biogenesis [BR:
hay03016
]
C3V42_05725
Enzymes [BR:
hay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C3V42_05725
Messenger RNA biogenesis [BR:
hay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V42_05725
Transfer RNA biogenesis [BR:
hay03016
]
Prokaryotic type
tRNA degradation factors
C3V42_05725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNA_pol_Rbc25
Vps27_GAT-like
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AVM60133
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All DBs
Position
1181769..1184117
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AA seq
782 aa
AA seq
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MTKKRKNLINQDPHYKRELEKYGNPIPSREFILSVIRDNNAPMNRDEILTALSIRNEDQI
EAIRRRLRAMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQIDGKKDDLFIPN
HQMQKVMHGDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRI
GRDILVPNEHRNGARMGQVVVVELQERSASFSQPIGVITEILGDNMAKGMEVEIALRNHD
IPHKFPSAVEKYVKKFTEEVPEEAKKGRVDLRNLLLVTIDGEDARDFDDAVYCEKHGKGW
KLWVAIADVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCM
VCEMQISAKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRSRYSTLVPHLEELYKL
YQTLLSARHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAHKIIEECMILANIAAANF
MEKHKEPALYRIHATPSEEKLTSFRTFLSEFGLNLEGGLKPTTKDYAALLEKVKERPDHE
LIQTMLLRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLDKEQGAK
RKTTDTGGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISS
VTGFGLFVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVCIKVEAV
HLENKMVDFSLMGSERKPRRAGKTAKEKAKKVFKELPSKASKKRKSAVKKKEVSKKTSRK
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacgtaaaaacttaatcaaccaagatccgcattacaaacgagaattggaa
aaatacggcaatccaatcccgagccgtgaattcattttaagcgttattcgagacaataat
gcaccgatgaatcgggatgaaattttgactgcactttccattcgaaatgaagatcaaata
gaagcgatacgtcgccgattacgtgcgatggaaaatgacggccaattagtgttcaccaaa
cgtaaacgctatgccttaccagaaaaattagatttatttaaaggcacggtaattggtcat
cgcgaaggttttggttttttacagatcgatggcaaaaaggatgatttattcattccgaac
catcaaatgcaaaaagtcatgcatggagattttgtcttagcgcaacctgctggattagat
cgtcgtggtcgccgtgaagtgcgaattgtgcgcgtattagaaagtcgtaaaaaacaaatt
gtgggccgctttttcttagaaaacggttttagctatgtggtacctgatgacagtagaatt
ggccgagatattctcgtgcctaatgaacatcgtaatggcgcacgtatgggacaagttgtc
gttgtcgaattgcaagaacgctctgccagttttagccagccaattggcgtgatcactgaa
attctaggcgataatatggcgaaaggaatggaagtggaaatcgccttgcgtaaccacgat
attccccataaatttccaagtgcggtggaaaaatacgtcaaaaaattcactgaagaagtc
cctgaagaagcaaaaaaaggtcgtgtggatttacgcaatttactgcttgtgaccattgat
ggtgaagatgctcgcgattttgacgatgctgtttattgtgaaaaacatggcaaaggctgg
aaactttgggtagcgattgcggatgtcagttattacgtacgtttgcgttccgctttggat
gtagaagcgcataatcgtggtaactcggtctattttccgaaccgagttgtaccaatgcta
cctgaaattttatcaaacggcttatgctctcttaaccctcaagtggatcgtttgtgtatg
gtgtgtgagatgcaaatttctgccaaaggtaagctaacagattatcgcttttatgaagcg
gtgatgaattctcacgcccgcctcacttataccaaagtagccaaaatgcttgaaggcgat
gaagaattacgatctcgttattctacgctggtacctcatttagaagaactttataaactc
tatcaaactttgcttagtgcacgtcatcaacgtggtgcaatcgattttgaaaccattgaa
accaagtttattttcaatgcaatggggagaattgagcgcattgaacccgttgttcgaaat
gatgcccacaaaatcattgaggaatgtatgattcttgctaatatcgcagccgccaatttt
atggaaaaacataaagaacctgcgttatatcgcattcatgccaccccgagcgaagaaaaa
ttaacatcgttccgcactttcttaagtgagtttggtttaaatttagaaggtggcttaaaa
ccaaccacaaaagactatgctgctctcttagaaaaagttaaagaacgacctgatcatgaa
cttattcaaacaatgttgctacgttcattaagtcaggctgtctatcacgctgataatatt
gggcactttggtttggctttggaagagtatgcacactttacttcgccaattcgccgttat
ccggacttaacacttcatcgaggcatcaagtatttactcgataaagaacaaggcgcaaaa
cgtaaaacaacggatactggtggttatcattactcttttgatgaaatggatttacttggc
aatcactgttctatgacggaacgccgcgctgacgacgctactcgtgaagtggctgattgg
ctgaaatgcgaatatatgcaagatcatgtcggcggtgaatttagcggtgttatttcatct
gtgacgggatttggtttatttgtacgcttagatgatttattcatcgatggtttagttcat
atttctaccttagaaaacgattattaccaattcgatgcagcaaaacaacgtttaattggc
gaaaatagcggaatgcaatatcgcttaggcgataaagtttgcatcaaagttgaggcggta
catttagaaaataaaatggtcgatttctcgctgatggggagtgaacgtaagcctcgtcgt
gcgggaaaaaccgcgaaagaaaaagccaagaaagtctttaaagagctaccctctaaagcc
tccaaaaaacgaaaaagtgcggtaaaaaagaaagaagtttcgaagaaaacatctagaaaa
cgaaaataa
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