Haemophilus sp. oral taxon 036: C3V42_08480
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Entry
C3V42_08480 CDS
T05707
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hay
Haemophilus sp. oral taxon 036
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hay03032
]
C3V42_08480 (topA)
03400 DNA repair and recombination proteins [BR:
hay03400
]
C3V42_08480 (topA)
Enzymes [BR:
hay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C3V42_08480 (topA)
DNA replication proteins [BR:
hay03032
]
Prokaryotic type
DNA Topoisomerases
C3V42_08480 (topA)
DNA repair and recombination proteins [BR:
hay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C3V42_08480 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AVM60648
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Position
1769700..1772306
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AA seq
868 aa
AA seq
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MSKSLVIVESPAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSSTGEKAKPISTKGMDAEE
KAKIKAEKERNALVKRMGIDPYHDWKANYQILPGKEKVVSELKSLAKKADHIYLATDLDR
EGEAIAWHLREVIGGDDERFSRVVFNEITKNAIKQAFEKPEQLNMDRVNAQQTRRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQPEEYWEVAVLTNNQNKQAI
RLDVTDYKGKKFDPKNQKEAQSAVDFLNISDYVVTDLETKPTSSRPRAPFITSTLQQTAS
TRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALNMARSYIENHFGAQYLPEKPNF
YSSKENAQEAHEAIRPSDIRALPESLEGMEKDAVRLYDLIWRQFLACQMPPAQYDSSTLT
VSAGDYTLKAKGRILRFDGWTKVLPQIGKNPEDQELPLVAVSEKLALKEVQPTQHFTKPP
ARFTEAALVKELEKRGIGRPSTYAAIISTIQERGYVRTENRRFYAEKMGEIVTDRLNESF
GELMNYDFTANMEDTLDKIASGSVNWKTELNQFFKDFSSQLSKAELDELEGGMRPNSLVE
TDIKCPTCGRKMAIRTASTGVFLGCTGYALPPKERCKTTINLIPEAELLNVLDESSETKA
LMDRKRCTKCGTAMDSYVIDAHRKIHICGNNPNCDGYLIEEGSFKIKGYDGPVVECDKCG
ADMHLKLGRFGKYMGCTNCDNTRKILKNGEVAPPKEEPVHFPELKCEKSDAYFVLRDGAS
GVFMSAHNFPKSRETRPVKIAELVQYRERLPEKLTYLADAPQKDPEGNEAIVRFSRKEKK
QYVTSEKDGKATKWIVDFTNGKWVERKK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatccttggtgattgtggagtcgccggcaaaagcaaagaccatcaataagtat
ttaggtagccaatatgtggtgaaatcgagtgttggacatattcgtgatttgccgacggtt
ggttctagtacaggtgaaaaagctaaaccaatttcaaccaaaggtatggatgccgaagaa
aaagcaaaaattaaggcagagaaggaacgtaacgccttagttaaacgtatggggattgat
ccttatcacgattggaaagcaaattatcagattttgcctggtaaagaaaaagtggtttcc
gaattaaaatcgcttgctaaaaaagcagatcatatttatctcgcaaccgacttggataga
gaaggagaagctattgcatggcatttacgtgaagtgattggtggcgatgatgagcgcttt
agccgagtagtgtttaacgaaatcactaaaaatgccattaaacaggcttttgaaaagcct
gaacaattaaatatggatcgcgttaatgcacaacaaactcgtcgttttttagatagagta
gtgggctttatggtgtcgccattactttggaaaaaagtcgcacgagggctttctgcgggt
cgagttcaatctgttgcggttaaattattagtagaacgcgagcgtgaaattaaagccttc
cagccagaagaatattgggaagttgccgttcttacgaataatcaaaataaacaagctata
cgtttggatgtcacggattataaaggcaaaaaatttgatccaaaaaatcaaaaagaagca
caaagtgcggtagattttcttaatatttccgattacgttgtcacagatttagaaactaag
ccaaccagttctcgccctagagcgccatttattacgtcaacgcttcaacaaactgcaagc
actcgcttgggatttggcgttaaaaaaacaatgatgttagcccaacgtttatatgaagcg
ggttacattacttatatgcgtacggactcaaccaatttgagtcaagatgcgcttaatatg
gcgcgtagctatatcgaaaatcattttggtgcacaatatttaccagaaaaaccaaatttc
tattctagtaaagaaaatgcgcaagaggcgcatgaggctattcgtccatcagacattcga
gcattgcctgaatctttagagggaatggaaaaagatgcggtacgcctttatgatttaatt
tggcgtcaattcttagcatgtcaaatgccgcctgcacaatatgatagcagtacattgact
gtgtcagctggcgattataccttgaaagcaaaaggcagaattttacgttttgatggttgg
acaaaagtattaccgcagataggcaaaaatcctgaagatcaagaattgcctttagttgct
gtttcagaaaaacttgctttaaaagaagtccaacccactcaacactttactaaaccacca
gctcgttttactgaagcggctttagtaaaagaattggaaaaacgtggtattggccgacct
tccacttatgcggcaattatttctactatccaagaacgtggctatgttcgtactgaaaat
cgtcgtttctatgcagaaaaaatgggcgaaattgtgactgatcgcctcaatgagtctttt
ggtgaattaatgaattacgatttcaccgcgaatatggaagataccttagataaaattgcc
tcaggttcggtaaattggaaaactgaattgaatcaattcttcaaggatttttctagccag
ctttctaaagctgaattggatgaacttgaaggcggcatgcgcccaaatagtcttgtggaa
accgatattaaatgtccaacctgtggtagaaaaatggccattcgtacggcgagtacgggg
gtatttttagggtgcacgggttatgcattgccaccaaaagagcggtgcaaaacgacgatt
aatttaattcctgaagcggaattattgaatgttttagatgaatcttcagaaaccaaggcg
ttaatggatcgtaaacgttgtacaaaatgtggaacggcaatggacagctatgtaatcgat
gcccatcgtaaaatccatatttgtggtaataatccaaattgtgatggatatttaattgaa
gaaggttcattcaaaattaaaggttatgatggccctgttgttgagtgtgataaatgcggt
gcggatatgcatttaaaacttggtcgttttggcaagtatatgggatgtacaaattgtgat
aacacgcgcaaaattttgaaaaatggcgaagttgcccctccaaaagaagagcctgtacat
ttccctgagttaaaatgcgaaaaatctgatgcatattttgtattgcgtgacggtgcgagt
ggtgtatttatgtcagcccataacttcccgaaatcccgcgaaacgcgcccagttaaaatc
gctgaacttgtgcaatatcgcgagcgtttacctgagaaattgacttatttagcggatgca
ccacaaaaagacccagaggggaatgaagcgattgttcgttttagtcgtaaagagaagaaa
caatatgtgacttctgaaaaagatgggaaagcgacgaaatggattgttgatttcaccaat
ggaaaatgggttgaacgaaaaaaataa
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