Halorussus salilacus: NGM10_13070
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Entry
NGM10_13070 CDS
T09338
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hayc
Halorussus salilacus
Pathway
hayc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hayc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NGM10_13070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hayc03019
]
NGM10_13070
03009 Ribosome biogenesis [BR:
hayc03009
]
NGM10_13070
04131 Membrane trafficking [BR:
hayc04131
]
NGM10_13070
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hayc04147
]
NGM10_13070
Messenger RNA biogenesis [BR:
hayc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NGM10_13070
Ribosome biogenesis [BR:
hayc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NGM10_13070
Membrane trafficking [BR:
hayc04131
]
SNARE
SNARE associated proteins
Others
NGM10_13070
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NGM10_13070
Exosome [BR:
hayc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NGM10_13070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
AAA_22
TIP49
AAA_33
AAA_2
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
Mg_chelatase
AAA_7
AAA_18
Sigma54_activat
ABC_tran
AAA_17
ATPase
DUF815
AAA_3
NB-ARC
Parvo_NS1
AAA_24
AAA_lid_PRS2_C
AAA_30
TsaE
AAA_11
SLFN-g3_helicase
Vps4_C
NACHT
PhoH
IPT
DUF6985
Motif
Other DBs
NCBI-ProteinID:
USZ67655
LinkDB
All DBs
Position
2531463..2533688
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGDTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVEIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETDPDGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLESEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDET
GREEVLQIHTRGMPLSDDVDLSRLANDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIVKREDFNGALNEVEPSAMREVLVELPKVSWDDVGGLEDAKEQVQESVEW
PLSSPEKFRRLGIDPPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTVIFFDELDSLAPSRSQEVGSNVSERVVNQLLTELDGLEEQGDV
MVIGATNRPDMIDPALIRSGRFDRLVMIGQPDEEGREQILKIHTDDTPLAADVSLRELAE
ITDGYVGSDLESIGREAAIEALREDDDATEVQMRHFRQAMENVRPTITDDLLDYYEQMED
EFKGGGSEPTQGRRGGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactagaggtggcgaaggcgtacccgaacgactcgggacgcggcatc
gctcgcctcgaccccgacacgttgctccatctgaagctgagccccggcgacatcatcgag
atcgagggcggtgacaccaccgccgcgaaggtgtggcgggccgaccgacaggactggaac
accgacacggtccgcatcgacggcttcacccgccagaacgccgacgtgggtatcggcgag
cgcgtcgaaatccggaaggccgaggccgagaaggccgacaagctggtgctcgcgccgccc
gaggaggccagcgtccagttcggctcggacgccgccgggatggtcaagcgccagatactc
aagcgcccggtggtcgagcgcgacatcgtccccgtgatgtcgagcacgaaccacccgttc
atgcggtcgcccggacaggcgattccgctcatcgcggtcgagacagaccccgacggggtc
tgtctcatcaccgaggacaccgaggtcgaactccgcgaggagcccatcagcggcttcgag
aagacgggcgggggcatcacctacgaggacatcggcggcctcgaaagcgagatccagcgc
gtccgggagatggtcgaactcccgatgaagcacccccagatattcaagaagctgggcatc
gagccgccacagggcgtcctcctccacggcccgccggggacgggcaagaccctgctcgcg
aaggcggtcgccaacgagacctccgcgagcttcttctccatcgcgggccccgagataatc
tcgaagtactacggggagtccgagcaacagctccgggagatattcgaggacgcgaccgag
gagtcgccctccatcatcttcatcgacgaactcgactccatcgcgcccaagcgcgaggac
gtgaccggcgaggtcgagcgccgggtcgtggcccaactgctgacgatgatggacggcctc
gaatcccgcgggcaggtcatcgtcatcgccgcgacgaaccgggtcgactcggtcgacccc
gcgctccggcgtccgggtcggttcgaccgcgagatcgagatcggcgtccccgacgagacg
gggcgcgaggaggtcctccagattcacacccgcgggatgcccctcagcgacgacgtcgac
ctctcgcggctcgccaacgacacccacggtttcgtgggtgccgacatcgagagcctgacc
aaggaggccgcgatgaaggccctgcgccggtacctccccgagatcgacctcgacgaggag
gacatcccgccgagcctcatcgaccggatgatagtcaagcgcgaggacttcaacggcgcg
ttgaacgaggtcgagccctccgcgatgcgcgaggtcctcgtcgagcttccgaaggtgtcg
tgggacgacgtgggcggtctcgaagacgccaaggagcaggtccaagagagcgtcgagtgg
cccctctcctcgcccgagaagttccggcggctgggcatcgacccgccgagcggggtcctg
ctgtacggcccgccggggacgggcaagaccctgatggcgaaggcggtcgccaacgagacc
aacgccaacttcatctccgtgcggggcccccaactgctcagcaagtgggtcggcgagtcc
gagaaggccatccgccagacgttccggaaggcccggcaggtctccccgaccgtcatcttc
ttcgacgaactcgacagcctcgcgccctcgcggagtcaggaggtcgggtcgaacgtctcc
gagcgcgtggtgaatcagctcctcacggaactcgacggactggaggagcagggcgacgtg
atggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcgctcatccggtcgggc
cggttcgaccgcctcgtgatgatcggccagcccgacgaggagggccgcgagcagatactc
aagatccacaccgacgacacgccgctggcggccgacgtgagcctgcgcgaactcgccgag
ataaccgacggctacgtggggagcgacctcgagtccatcggccgcgaggccgccatcgag
gcgctccgggaggacgacgacgccaccgaggtccagatgcgccacttccggcaggcgatg
gagaacgtccggcccaccatcaccgacgacctgctcgactactacgagcagatggaagac
gagttcaagggcggcggctccgaacccacgcagggtcggcgcggcggccgcatcggcttc
cagtag
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integrated database retrieval system
