Halorussus salilacus: NGM10_13580
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Entry
NGM10_13580 CDS
T09338
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hayc
Halorussus salilacus
Pathway
hayc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hayc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NGM10_13580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hayc03019
]
NGM10_13580
03009 Ribosome biogenesis [BR:
hayc03009
]
NGM10_13580
04131 Membrane trafficking [BR:
hayc04131
]
NGM10_13580
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hayc04147
]
NGM10_13580
Messenger RNA biogenesis [BR:
hayc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NGM10_13580
Ribosome biogenesis [BR:
hayc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NGM10_13580
Membrane trafficking [BR:
hayc04131
]
SNARE
SNARE associated proteins
Others
NGM10_13580
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NGM10_13580
Exosome [BR:
hayc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NGM10_13580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_5
AAA_22
AAA_14
NPHP3_N
RNA_helicase
AAA_33
AAA_7
nSTAND3
AAA_lid_PRS2_C
DUF815
AAA_25
AAA_28
AAA_3
IstB_IS21
Mg_chelatase
AAA_18
AAA_30
NB-ARC
Parvo_NS1
ABC_tran
AAA_24
TsaE
AAA_17
ATPase
AAA_11
Sigma54_activat
AAA_19
bpMoxR
PhoH
SLFN-g3_helicase
ATPase_2
Zot
Motif
Other DBs
NCBI-ProteinID:
USZ67753
LinkDB
All DBs
Position
2628127..2630391
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRRSMQELGVENGDYVVIEGKGQGRAVARVWPGYPEDEGR
GVVRIDGQLRQEAGVGIDDKVTIEKADVKPANSVTIALPQNLQIRGNIAPHIRDKLSGQA
ITQGQNVPFGFGLMGMGSGQSIPLKVASTDPDGTVVVTDSTQIDISERPAEEISSGSGAG
GEGRPEVTYEDIGGLEGELEQVREMIELPMRHPELFSRLGIDPPKGVLLHGPPGTGKTLM
AKAVANEIDAHFRTISGPEIMSKYYGESEEQLREVFEEAEQNTPAIVFIDELDSIAPKRE
EAGGDVERRVVAQLLSLMDGLESRGDVTVIGATNRVDAIDPALRRPGRFDREIEIGVPDR
EGRLEILQVHTRGMPLAEGVDLEAYADNTHGFVGADLESLAKESAMNALRRIRPEIDLES
EEIPADVLDSLKVTRNDFKDALKGIEPSALREVFVEVPDVSWDQVGGLEDTKERLRETIQ
WPLEYPEVFETLDMQAAKGVLLYGPPGTGKTLMAKAVANEADSNFISIKGPELLSKWVGE
SEKGVREVFSRARENAPTVVFFDEIDSIAGERGRGQGGGSQVGERVVSQLLTELDGLEEL
EDVVVIATSNRPDLIDSALLRPGRLDRHVHVPVPDEEARRAILEVHTRDKPLADDVDLDD
LAEETEGFVGADIEALAREASLAASREFIHSVDREEIAESVGNVRISREHFETALDEITP
SVDEETKQRYEEIEERMDSSEPEAEQDQLGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgtcaagccgctgaaacagaaggacgctggccgcggcctggccgccatc
gaccgccggtcgatgcaggaactcggcgtcgagaacggcgactacgtcgtcatcgagggc
aagggtcagggccgggcggtcgcccgcgtctggcccggctaccccgaggacgagggccgg
ggcgtcgtccgcatcgacggccagctacgacaggaggctggcgtgggcatcgacgacaag
gtgaccatcgagaaggccgacgtgaagcccgccaactccgtcaccatcgcgctcccccag
aacctccagatccgcgggaacatcgcgccccacatccgcgacaagctgagcggacaggcc
atcacgcagggccagaacgtcccgttcggcttcgggctgatgggcatggggtcgggccag
tccatcccgctgaaggtcgccagcaccgaccccgacgggacggtcgtggtgaccgactcc
acccagatcgacatcagcgagcgccccgccgaggagatctcgtccgggagcggcgctggc
ggcgagggccgccccgaggtgacctacgaggacatcggcggcctcgaaggcgagctagag
caggtccgggagatgatcgagctcccgatgcgccaccccgagctgttcagtcggctcggc
atcgacccgccgaagggcgtcctgctccacggcccgcccggcacgggcaagaccctgatg
gcgaaggccgtcgccaacgagatcgacgcccacttccggaccatctcgggccccgagatc
atgagcaagtactacggggagtccgaggaacagctccgggaggtgttcgaggaggcagaa
cagaacaccccggccatcgtgttcatcgacgaactcgactccatcgcgcccaagcgcgag
gaggcgggcggcgacgtagaacgccgggtcgtggcccagctcctgtcgctgatggacggc
ctcgaatctcggggcgacgtgacggtcatcggcgcgaccaaccgcgtggacgccatcgac
cccgcgctccggcggccgggtcggttcgaccgcgagatcgagatcggcgtccccgaccgc
gagggtcggctcgaaatcctgcaggtccacacccgcgggatgcccctcgcggagggcgtc
gacctcgaagcctacgccgacaacacccacggcttcgtgggcgctgacctcgaaagtctc
gccaaggagtcggcgatgaacgccctgcggcgcatccggcccgaaatcgacctcgaatcc
gaggagattccggccgacgtgctcgactcgctcaaggtcacccggaacgacttcaaggac
gcgctcaagggcatcgagccctcggcgctgcgcgaggtgttcgtcgaggtccccgacgtc
tcgtgggaccaggtcggcgggctggaagacaccaaagagcgcctccgcgagaccatccag
tggccgctggagtaccccgaggtgttcgagacgctcgacatgcaggccgccaagggcgtc
ctgctctacggcccgcccggcacgggcaagaccctgatggcgaaggccgtcgccaacgag
gccgacagcaacttcatctcgatcaagggccccgaactcctcagcaagtgggtcggcgag
tccgagaagggcgtccgcgaggtgttcagccgcgcccgcgagaacgccccgaccgtggtg
ttcttcgacgagatagactccatcgcgggcgaacgcggccgcggtcagggcggcggctcg
caggtcggcgagcgcgtggtctcccagctcctcacggagctcgacggcctcgaagagctc
gaggacgtggtcgtcatcgcgacctcgaaccggcccgacctcatcgactcggcgctcctg
cgccccgggcgtctggaccgccacgtccacgtaccggtgcccgacgaggaggcccgccgg
gccatcctcgaggtccacacccgcgacaaaccgctggccgacgacgtggacctggacgac
ctcgccgaggagaccgagggcttcgtcggtgccgacatcgaggcgctcgcacgcgaggcc
tcgctggcggccagccgggagttcatccacagcgtcgaccgcgaggagatcgcagagagc
gtcgggaacgtccgcatcagccgcgagcacttcgagacggcgctcgacgagataacgccc
agcgtcgacgaggagaccaagcagcgctacgaggagatagaagagcgcatggactcctcg
gaacccgaggccgaacaggaccaactcggccggacgttccagtag
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