Halothiobacillus diazotrophicus: A9404_05650
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Entry
A9404_05650 CDS
T04441
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haz
Halothiobacillus diazotrophicus
Pathway
haz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9404_05650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haz03019
]
A9404_05650
03009 Ribosome biogenesis [BR:
haz03009
]
A9404_05650
Enzymes [BR:
haz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9404_05650
Messenger RNA biogenesis [BR:
haz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9404_05650
Ribosome biogenesis [BR:
haz03009
]
Prokaryotic type
rRNA helicases
A9404_05650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ANJ66933
UniProt:
A0A191ZGE0
LinkDB
All DBs
Position
1271345..1273099
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AA seq
584 aa
AA seq
DB search
MSEENAILFSDLALSEPLLRAIEELGYEAPSPIQAKSIPPLLEGRDVLGMAQTGTGKTGA
FSLPLLSRIDLNLRAPQLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPIYGGQAMEPQL
RGLKRGVHVVVGTPGRIQDHLKRGTLKLNQLQAVVLDEADEMLRMGFIDDVDEILSKTPA
SRQVALFSATMPEQIRRIAQRHLRSPVEISIKASTSTVQTITQRYWPVSGVHKLDALTRI
LEVENFDAVIIFVRTKVATTELAEKLEARGYAAAALNGDMNQALREKAIDRLKRGSLDIV
IATDVAARGIDVARVSHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLSA
IERATGQPITPMRLPSQSDIADKRSADFKNQITEAMESQELDFFETLIEQYQTEHDVGLA
EIAAALAYMAQKDRPLLPDEIPETPSHAFSERPRRDDNRRDEPRQRRNDDIPRVKYRIEI
GRDQGVAPKNIVGALANEAGIDSKYIGAIRIFDQYSTVDLPEGMPNEVFNQLKRLHVLGV
PLNISEAGPNDGDESSHRPPSRKFGPRGGNDGFGGKPRRPKQRY
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagaaaacgccattctattttccgacctcgccctgtctgagccgctgttgcgt
gcgatcgaagagctgggttacgaagccccctcgcccattcaggcgaaaagcatcccgccc
ctcctcgaaggcagggacgtgctcggtatggcacagaccggcaccggcaagaccggcgcc
ttttccctgcccctgctgagccggatcgatctgaacctgcgcgcaccgcagcttctggtg
ctggcacccacccgcgaacttgccatccaggtggccgaggccatgcaggcctatgcccgc
catctgccggatttccatgttctgccgatctatggtggacaggccatggagccccagttg
cgcggcctgaagcgcggcgtgcacgtcgtcgtcggcacgcccggccgaatccaggaccac
ctgaagcgcggcacgctcaagctgaaccagctgcaggccgtcgtgctggatgaagccgac
gaaatgctgcggatgggcttcatcgacgacgtcgacgaaatcctgagcaagacgccggcc
agccgccaggtcgcgctgttctccgccaccatgcccgagcagattcgccggattgcccag
cgtcatctgcgttcgcccgtcgaaatcagcatcaaggccagcacctcgaccgtccagacg
atcacccagcgctactggccggtcagcggcgtgcacaagctggacgccctgacgcgcatt
ctcgaggtcgagaacttcgacgccgtcatcattttcgtacggaccaaggtcgccaccacc
gaactcgccgagaagctggaagcgcgcggttatgcggccgcagccctgaatggcgacatg
aaccaggccctgcgcgaaaaggccatcgatcgcctcaagcgcgggtcgctggacatcgtc
atcgccaccgacgtcgccgcgcgcggcatcgacgtggcccgcgtcagccacgtcatcaac
tacgacatcccgctggataccgaatcctatgtccaccgcatcggccgtaccggtcgcgcg
ggccgttcgggcgaggccatcctgttcgtcgcgccgcgtgaaaagcggatgctgtccgcc
atcgaacgcgccaccggccagcccatcaccccgatgcgcctgccgagccagagcgacatc
gccgacaagcgcagcgcggacttcaagaaccagatcaccgaagccatggaatcgcaggag
ctcgacttcttcgaaaccctgatcgagcagtaccagacggaacatgatgtcggtctggcc
gagatcgcggccgccctggcctacatggcccagaaggaccgcccgctgctgccggacgaa
atccccgaaactccgagccatgccttcagcgagcgtccgcgccgggatgacaaccgccgt
gacgagccccgccaacgccgcaacgacgacattccgcgcgtcaagtaccggatcgagatc
ggccgcgatcagggcgtcgccccgaaaaacatcgtcggcgcgctcgccaacgaagcaggc
atcgacagcaagtacatcggcgcgattcgcatcttcgatcagtacagcacggtcgatctg
cccgaaggcatgccgaacgaagtcttcaaccagttgaagcgcctgcatgtactcggcgta
ccgctcaacatcagcgaagccggccccaacgacggcgacgaatcctcgcaccggccgcct
tcacgcaagttcggcccgcgcggtggcaacgacggcttcggcggcaagccgcgtcgcccc
aagcaacgctattga
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