Halothiobacillus diazotrophicus: A9404_10385
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Entry
A9404_10385 CDS
T04441
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
haz
Halothiobacillus diazotrophicus
Brite
KEGG Orthology (KO) [BR:
haz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haz03019
]
A9404_10385
Enzymes [BR:
haz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A9404_10385
Messenger RNA biogenesis [BR:
haz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A9404_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
WHD_HA2
HA2_C
AAA_19
AAA_22
T2SSE
nSTAND3
FtsK_SpoIIIE
SLFN-g3_helicase
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ANJ67729
UniProt:
A0A191ZIN1
LinkDB
All DBs
Position
2350265..2354527
Genome browser
AA seq
1420 aa
AA seq
DB search
MNDRSPHPESPSDIPKPPEGPGAQTPDPKNPEDVTAFLRAHLDQLPLSDVPRLARRLAGF
ERSLRAGDGGKGQRDPAHPGRNGPGKAGRAPRTPDTLATLVDAFEASAALVTARRGHDLK
FDYPDDLPVSGERTKIMDLLRAHPVVIVAGETGSGKTTQLPKMLLELGYGLRGQVGHTQP
RRIAARNVASRLAEELGSAGAQAVGYKVRFSDQTQPTSRVAVMTDGILLAEINRDPDLLR
YDALIIDEAHERSLNIDFLLGILRQLIERRPDFRLVITSATIDTARFAQHFARLDPATGS
LLPAPVVPVSGRSYPVEIRYRPLDASRQGDDAGDGDAAGEERDLPAAVVAAVDELIVEGL
GDILVFLPGEREIRDCAQRLSRHGLRHTEILPLYARLSTAEQQRVFAPHTGRRVVLTTNV
AETSLTVPGIHYVIDSGLARIARYSPRSRVQKLAVEAISQASAKQRAGRCGRIAPGICIR
LYDEADFTGRPAFTNPEILRTNLASVVLRLIDLKLGEPEHFPFIEPPDSRQLAAARRLLF
ELHGLDGEQRITTLGRRLARLPVDPTLARMVLAALSLGDAVAVDTLIVVAFLSIQDPRER
PADHAQAADQAQQAFRVADSDFAAVLSLWHAWHQVVRHESQRQRRAWAKRHFLSYNRLLE
WHDLFGQLRQIVDELNQRALPDAQPVPGPGVELAESDKSGWQTRLDQLHQAILPGLLAQI
GMRDEAQRADRTEKADQRGQKKRTPTVYIGANNRRFMLFPGSGVAKLSPKWVMSAEIVET
TRVYARMVAAINPRWIEPLAGHLTTREHSEPQWDQRGGRVMAFETVKLFGLPIVTKRRID
FGRIDPLLAREIFIRSALVEGAFESNLRFWRDNQALISEIRELEARTRRPDLLIDDQVIF
DFYASHLPADVHDTAGLVRWLKEVGPSQPTALCMTRDDVLKREPDQHDPKGFPDRLQMGA
FSLPLHYHFAPGSDDDGVTLRLPLAALNQIDAARASHLIPGLRREKIEALIRGLPKADRR
HFVPAPEFAAAVNERIAVEQGDLIGQLATELHRMTGHRVDPELFDERKLLSHLRMRFAVV
NDAGEELDADRDLTVLVARHQAAAQQAFAQRTRHRLERDDLTDWSLGDLPEQLTVEQQGA
QLQAYPALVDAGDHVRVALLDDAERALAAHRAGVTRLLMLALPEQVRHLMQYLKQERALD
PARLQYSQLSHRRPLPEQGLVLPNRRDVAFDTEIVARAVAGLAVDDRPPVRDASGFAERV
EWLRPRLDEAVRQLAEQLRGLFAQHQALRARLKGRLPLSQIEAAREVAEQFDALIYPGFI
WYTPQSLFGQLPRYLTAAEKRLEKIDRHPERDRMLRVQFMPLCSRVLARIGQSTDDPAEF
LALCRLQEQLEEWRVATFAQELARKGAPAAPEIEQSLKRF
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgatcgccccaccccgagtccccatcggacatccccaagccgcccgaaggg
cccggggcgcagacgcccgacccgaaaaaccccgaggatgttaccgcttttttgcgggcg
catctcgatcaattgcccctgagcgatgtcccccggctggcccggcggctggcgggattc
gagcggagcctgcgtgcgggagacggcggaaagggtcaacgtgacccggcgcatcctggt
cggaatggtcccggcaaggcagggcgagcgccccgaactccggataccctggcgacgctg
gtggatgccttcgaggcgtcggccgcgctggtgacggcgcgccgggggcatgacctgaaa
ttcgactatccggacgatctccccgtcagcggcgaacgcacgaagatcatggatctgctg
cgcgcccatccggtggtgatcgtggccggggaaaccggctcgggcaagaccacgcagttg
ccgaagatgctgctggagctggggtacggcctgcgcggacaggtcggccatacccagccc
cggcggatcgcggcgcgcaacgtcgccagtcgtttggccgaggagttgggttcggcggga
gcgcaggccgtcggctacaaggtgcgtttctccgatcagacgcagccgacgagccgggtc
gccgtgatgaccgacggcatcctgctggccgagatcaatcgcgatcccgatctgctgcgc
tacgacgccctgatcatcgacgaggcgcacgaacgcagtctgaacatcgactttctgctc
gggatcctgcgtcagttgatcgaacgccggcccgatttccggctggtgatcacctccgcg
acgatcgatacggcccgattcgcacagcatttcgcccggctcgaccccgccacgggcagc
ctgctgccagcgcccgtcgtgccggtgtcggggcgcagctatccggtcgagatccgttat
cggcccctggatgcgtcccgacagggcgacgacgcgggtgacggggatgcggccggggag
gaacgcgatctgccggccgccgtggtggcggcggtggacgaactgatcgtcgagggactg
ggcgatatcctggtgttcctgcccggcgagcgcgagatccgcgattgtgcccagcgactt
tcccggcacggcctgcgccataccgagatcctgccgctgtacgcccggctgtccacggcg
gagcagcagcgggttttcgcgccgcacacgggacgccgggtcgtgctgaccacgaacgtg
gcggaaacctccctgaccgtgccgggtatccattacgtgatcgactccggtctggcgcgc
atcgcccgttacagccctcgttcccgggtgcagaaactggcggtcgaggccatttcccag
gcctcggccaagcagcgggccgggcgctgcgggcgcattgcgccggggatttgcatccgc
ctgtacgatgaggcggacttcaccgggcgaccggccttcaccaatccggaaatcctgcgt
accaatctcgcttccgtggtgttgcgcctgatcgacctgaagctgggcgagccggagcat
ttccctttcatcgaaccgcccgattcgcgccagctggcagcggcgcggcgactgctgttc
gagttgcacgggctcgatggcgaacagcgcattacgacactgggacggcgtctggcacgg
ttgcccgtcgatcccacgctcgctcggatggtgctggcggccctgtcgctgggcgatgcc
gtggccgtcgataccctgatcgtggtggcgttcctgtcgatccaggatccgcgcgagcga
ccggccgatcatgcccaggccgccgatcaggcgcagcaggcgtttcgggtggccgattcg
gatttcgccgccgtgttgtccctgtggcatgcctggcatcaggtggtgcggcacgaatcg
caacgccagcgccgggcatgggccaagcggcatttcctgtcctacaatcgtctgctcgaa
tggcacgatctcttcggccaactgcggcagatcgtcgatgagctgaaccagcgcgcgcta
cccgacgcgcagcccgtgccggggcccggtgtcgagcttgccgagtcggacaagtccggc
tggcagacccgcctcgaccagttgcaccaggcgattctgcccggcctgctggcccagatc
ggcatgcgtgacgaggcgcagcgggcggatcggacggagaaggccgaccagcgcggtcag
aagaaacgcacgcccaccgtgtatatcggggcaaacaaccgccgtttcatgctgtttccc
ggttccggggtcgccaagctgtcgcccaagtgggtcatgagtgccgagatcgtcgagacc
acccgtgtgtatgcgcggatggtcgcggcgatcaacccgcgctggatcgagcctctggcg
gggcatctcacgacccgggaacacagcgagccgcaatgggatcagcgcggcggacgcgtg
atggctttcgagaccgtgaagctgttcggtctgccgattgtcaccaaacggcggatcgac
ttcggacggatcgatccgctgttggcgcgggagatcttcattcgttccgcgctggtggag
ggtgcgttcgagagtaatctgcgcttctggcgggacaatcaggcattgatctccgaaatt
cgtgagctggaggcgcgcacgcggcgaccggacctgctgatcgacgatcaggtcatcttc
gatttctacgccagccatctgccggcggacgtgcatgacaccgccggcctcgtacgctgg
ctgaaggaagtgggcccctcgcaaccgaccgccctgtgcatgacgcgcgacgacgtgctc
aagcgcgagcccgaccagcacgatcccaagggcttccccgaccgcctgcagatgggcgcc
ttcagtctgccgctgcattaccacttcgcgccgggcagcgacgacgacggggtgacgttg
cgcctgccgctggccgccctcaaccagatcgacgccgcacgggccagtcatctcattccc
ggcttgcggcgggaaaagatcgaggcgctgatccgtggtctgcccaaggcggatcggcgg
catttcgtgcccgcacccgagtttgcggccgccgtcaacgaacggattgccgtggagcag
ggcgatctgatcgggcagctggcgacggagttgcatcgcatgaccgggcatcgcgtcgat
cccgaactgttcgacgaacgcaagctgctgtcacacctgcggatgcggttcgcggtggtc
aacgatgcgggcgaggagctggatgccgaccgggatctgacggtgctggtcgctcgccac
caggcggcggcgcaacaggcctttgcccagcggacgcgccaccggctggagcgtgacgac
ctgacggactggtcgctgggcgatctgcccgagcagctcaccgtcgagcagcagggggcg
cagttgcaggcctacccggcgctggtcgatgccggggatcacgtccgcgtggcgctgctt
gacgacgcggagcgggcgctggcggcgcaccgggccggcgtgacgcggctcctgatgctc
gccttgccggagcaggtccggcacctgatgcaatacctcaagcaggagcgggcgctcgat
ccggcgcgtctgcagtacagtcagttgagtcatcgccgcccgctgccggaacaggggcta
gtcctgccgaatcggcgggatgtggccttcgatacggaaatcgtggcccgcgcggtggcc
ggactggccgtcgacgaccgtccaccggttcgggatgcgtccgggttcgccgaacgggtc
gaatggctccggccgcggctggatgaggcggtgcgccaactggccgagcagttgcgcggc
ctgtttgcccagcatcaggcgctgcgggcccgactcaagggtcggttgccgctgtcgcag
atcgaggcggcgcgggaggtggcagaacagttcgatgcgctgatctatcccggattcatc
tggtatacgccccagagcttgttcggccagttgccccgctacctgacggcggcggagaag
cgcctggagaagatcgaccggcatcccgaacgggatcggatgcttcgggtgcagttcatg
ccattgtgcagccgggtcctagcgcggatcggtcagtcgacggacgatccggccgagttc
ctggccttgtgccggttgcaggagcaactcgaggagtggcgcgtcgccacgttcgcccag
gagttggcacgaaagggtgcaccggccgcgccggagatcgagcagagtctgaaacgattc
tag
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