Halothiobacillus diazotrophicus: A9404_12725
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Entry
A9404_12725 CDS
T04441
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
haz
Halothiobacillus diazotrophicus
Pathway
haz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9404_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haz03019
]
A9404_12725
03009 Ribosome biogenesis [BR:
haz03009
]
A9404_12725
Enzymes [BR:
haz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A9404_12725
Messenger RNA biogenesis [BR:
haz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9404_12725
Ribosome biogenesis [BR:
haz03009
]
Prokaryotic type
rRNA processing factors
A9404_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
FXR_C1
Motif
Other DBs
NCBI-ProteinID:
ANJ68121
UniProt:
A0A191ZJN9
LinkDB
All DBs
Position
2841480..2844569
Genome browser
AA seq
1029 aa
AA seq
DB search
MLINATHAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYGAD
RHGFLPFKEIARSYFDPEAVDDKGRPVIKSALKEGQEILVQVEKEERGNKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGDDRADIKAALSELDVPEGMGLIVRTAGVGREASELQA
DLNYLRQVWDAILKKAESRKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPKMHQQALE
FVNLVSPDAVNKIRLYQDRTPLFTRYQIEGQIESAYERTVTLPSGGELVFDVAEALTAVD
INSGRSTKGQDIEETAFHTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREVENRL
RDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESLALSI
LRQMIDEAMKDQTARVIAQVPVDVATYLLNEKREQLRIIEQDNRVELLLIPNINLETPHF
TVERVRASDLGESPASARSLIEPLAVVVPDTDRPLRRVPPPTNVLAPAKPAAPAPVAEVQ
PPVVVPAATPSAPSSPLSLLKRVIGQIFGSSTSGATVEPPAAAEAPAQTKAPRAATGRPP
RGAQGESKGEQKGRKPRTPAKPAVAANAEPEDEKPTSEQKPSGNRRRRSRNRKPAGETPA
VANVAAVETAGTQPARAAREEGADTKSRESRGGAQAVRPLAAHEQNLVAQQLSAPVADRQ
ALPLDVGVKRDPAENIRPNAAVSLMTDDRVVAAGVAAVGAALLAEASDASALTAVSTQGG
ARVAETEVEAPYQSSDTQSSDTQSVDPVESVANSEAVAEPAVASQAQPVAEPVVASAEPV
VDTAVQPADPDMSVIAPTSERVDADTGPSVEVPAMAPVAPDAAVEAQPEIESSDVTSSVS
APAMTAEVVESAAVHAPDESDFEKDATPIVERPASEAVMSEPSVAEAPTAPVVESESLNP
EPEQVEPIASTAEDQVTSPESVAVDQVSVLEPVVDHDAVPTEADASAPVADAVTDASGQD
ETEASHKHS
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcaatgccacacatgccgaagagattcgtgtggcactcgtcgacggccaaacc
ctctatgacatcgacatcgagacgccgggccacgagcagaagaaatccaatgtctacaag
gcgctgatcacccggatcgagcccagcctcgaagccgtcttcgtcaactatggcgccgat
cgccacggtttcctgcccttcaaggaaatcgcgcgcagctacttcgaccccgaagccgtg
gatgacaaggggcgtcccgtcatcaagtccgccctgaaagaggggcaggaaatcctggtc
caggtggagaaggaagagcggggcaacaagggcgcggccctgaccacctttgtcagcctg
gctggccgttacctcgtgctgatgcccaataacccgcgtgcgggtggcgtttcccgccgg
atcgaaggcgacgaccgggcggacatcaaggccgctctatccgaactggatgtgccggaa
ggcatggggctgatcgttcgcacagccggggtcgggcgcgaggccagcgagcttcaggct
gacctcaactacctgcgccaggtctgggacgccattctgaagaaggccgaatcccgcaag
gcgccgttcctgatctaccaggaaagcgatctcatcatccgtgccctgcgcgactacatg
cgcaacgacatcggcgaggtgctgatcgacgaaccgaaaatgcatcagcaggcgctggaa
ttcgtcaatctcgtttcgccggatgcggtgaacaagatccggctgtatcaggaccggacg
cccctgtttacccgttaccagatcgaaggccagatcgaatccgcctacgaacgtaccgtg
acactcccttcgggcggcgaactcgtattcgacgtggccgaggccctgacggccgtggat
atcaactccggccgcagcaccaaggggcaggacatcgaggaaaccgccttccacaccaac
ctggaagcggcggatgaaatcgcccggcaattgcgtctgcgcgacctgggcggcctcgtg
gtgatcgatttcatcgacatggggcaacccaagcatcagcgcgaggtcgagaaccgcctg
cgcgacgcgttgaagatggatcgtgcgcgtgttcagctcggccggatctcccgtttcggc
ctgctcgaaatgtcgcgtcagcgtctgagtgcttcccttgaggaatcggcccagcacgtc
tgcccgcgatgcatggggcaggggcatatccgctcggtggaatccctggcgctgtccatc
ctgcgacagatgatcgacgaggccatgaaggaccagaccgcgcgggtgatcgcccaggtg
ccggtcgacgtggccacctatctgttgaacgagaaacgcgagcagctgcgcatcatcgag
caggacaaccgggtcgaactgctgctgattccgaacatcaacctggaaacgccgcatttc
accgtcgagcgcgtccgggcatcggatctgggcgagtcgccggcgtccgcacgctcgctg
atcgagccgctggccgtggtcgtgcctgatactgatcgtccgctccgtcgcgtgcccccg
ccgacgaacgtcttggcgccggcgaaacccgcagcgcctgcgcccgttgcggaagtgcag
cctcccgtcgtggtgccggcagcgacgcccagcgccccaagcagcccgctcagcctgctc
aagcgggtgattggacagatcttcggttcatccactagcggcgccactgtcgaaccgccg
gcagcggccgaggccccggcgcagaccaaggcgccgcgcgccgccacgggccgcccgccg
cgcggcgctcagggtgaaagcaaaggcgagcagaagggccgcaagccgcgtacgccggcc
aaaccggccgttgctgcgaacgcggaacccgaagacgaaaaaccgaccagcgagcagaag
ccgtcggggaatcgtcgtcgccgttcacgcaacaggaagccggctggggagaccccggca
gtcgccaacgtcgcagcggtcgaaacggccggtacacagcccgcccgtgccgcacgggaa
gagggtgccgacaccaagtcgcgcgaatcgcggggcggtgcccaggccgttcgccccttg
gcggctcatgagcagaacctggtcgcccagcagttgagcgcaccggtcgccgatcgccag
gccttgccgctggatgttggcgtcaagcgggacccggcggaaaatattcgaccgaatgcc
gccgtatcgctgatgacggatgatcgggtggttgcggctggcgttgccgcagtgggtgct
gcgctcctggccgaggcgagcgatgcatcagccttgaccgcagtctcaactcagggcggg
gcgcgtgtggctgagactgaggttgaggcgccgtatcaatcgtccgatacccaatcgtcc
gatacccaatcggttgatccggtggaatcagtcgccaattcggaagctgtggccgagccc
gctgtcgcgtcacaagcgcaacccgttgctgaaccggtagtggcgtccgccgagccggtg
gttgatacggctgtgcagcctgccgatcccgatatgtccgttatcgcgccgacgagcgag
cgcgtcgatgccgacaccgggccctcggtcgaagtgccagccatggcaccggtcgccccg
gacgctgccgtggaagctcaaccggagatcgagtcgtcggatgtgacgtcatcggtttcc
gcgccagcgatgactgccgaggtggttgagtccgcggcagttcatgcaccggacgagtcc
gacttcgagaaggatgccacgccgatcgtggagcgtcccgcctctgaagctgtgatgagc
gagccgtccgttgctgaagcgccaacggccccggtggtcgagtccgaatcgctaaacccg
gaaccggagcaggtggagccgatcgcgtcgacagccgaggatcaggtcacctctccggaa
tccgttgcggtcgatcaggtcagcgtgctcgaaccggtggtcgatcacgatgccgttccg
actgaggcggatgcttctgcccccgtggcggatgcggtgacggatgcatccggtcaggat
gagaccgaggcgtcacacaagcactcctga
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