Halomicrobium sp. ZPS1: GBQ70_02415
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Entry
GBQ70_02415 CDS
T07700
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hazp
Halomicrobium sp. ZPS1
Pathway
hazp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hazp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GBQ70_02415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hazp03021
]
GBQ70_02415
Transcription machinery [BR:
hazp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
GBQ70_02415
Prokaryotic type
Archaeal type
TFB
GBQ70_02415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_LysW
DUF5817
Cas12f1-like_TNB
Anti-TRAP
A2L_zn_ribbon
Auto_anti-p27
HTH_Tnp_ISL3
Zn_ribbon_tTFIIB
DZR_2
Zn_ribbon_FGT1_1
Motif
Other DBs
NCBI-ProteinID:
QFR19353
LinkDB
All DBs
Position
467357..468340
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AA seq
327 aa
AA seq
DB search
MSDSNTRTRARTRTTTDEEQTEEESETTSTACPECSGTLVVDDEHGETVCEDCGLVVETD
EIDRGPEWRAFDSSEKDEKSRVGAPTTNMMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQ
RLRKWNERFRTRDSKERNLKQALGEIDRMASAVGLPENVRETASVIYRRALDENLLPGRS
IEGVSTASVYAAARQAGVPRSLDEIDEVSRVEKSEIARTYRYVVRELGLEVAPADPESYV
PRFASSLELSDEAEHRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVS
EVADISEVTIRNRYHELLEAEQGLPMA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattcgaacaccagaacgcgagcgagaacgcgcacgacgaccgacgaggaacag
acagaagaagagagcgagacgacatcgaccgcgtgcccggagtgttcgggcacgctggtc
gtcgacgacgagcacggcgagacggtctgtgaggactgcgggctcgtcgtcgagaccgac
gagatcgaccgcggaccggagtggcgagcgttcgactccagcgagaaagacgagaagtcc
cgcgtcggcgcaccgacgaccaacatgatgcacgacaaggggctgtcgaccaacatcgac
tggcgcgacaaggacgcctacggcaactccctgtcgggcaagcaacgccagaagatgcag
cgcctgcgcaagtggaacgagcggttccgcacccgtgactccaaggagcgcaacctcaag
caggcactgggcgagatcgaccggatggcctccgccgtcggcctcccggagaacgtccgc
gagaccgcgagcgtcatctaccgccgtgcgctggacgagaacctcctgcccggtcgctcc
atcgagggcgtctcgacggcctccgtctacgccgccgctcgtcaggccggcgtcccccgg
agcttggacgagatcgacgaggtctcccgcgtcgagaagagcgagatcgcacgcacgtac
cgctacgtcgtccgcgaactcggcctcgaagtcgcgccggccgaccccgagagctacgtc
ccccgctttgcctcctcgctggaactgtcggacgaggccgagcatcgcgcccgccagctg
ctccagaacgccaaagagcagggcgtccactccggcaagtccccggtcggactggccgca
gcggccgtgtacgccgccgcactgctgaccaacgagaagacgacccaggccgccgtcagc
gaggtcgccgacatctccgaggtgacgatccgcaaccgctaccacgagctgctggaggcc
gagcagggcctcccgatggcctga
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