Halomicrobium sp. ZPS1: GBQ70_02775
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Entry
GBQ70_02775 CDS
T07700
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hazp
Halomicrobium sp. ZPS1
Brite
KEGG Orthology (KO) [BR:
hazp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hazp03016
]
GBQ70_02775
Enzymes [BR:
hazp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GBQ70_02775
Transfer RNA biogenesis [BR:
hazp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GBQ70_02775
Prokaryotic type
tRNA splicing ligases
GBQ70_02775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFR19423
LinkDB
All DBs
Position
531670..533112
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AA seq
480 aa
AA seq
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MIELTGDHTTARVMVEDESLVEENCLDQIRTLIDHPAFTEPVRVMPDTHWGAGAPIGFTM
PLGERIVPNIVGVDVGCGMAATKLGSTLPLSDAERERRVREAIPMGQTVHDYDDAVHLVE
EFPFERANEVFEAFAASFEERFGTAIDPLEFDFEGYDADYFESLCERVLAQQRQSMGYVI
RGVGTLGGGNHFVEFARAQTTGDYWLIVHSGSRYLGKSVAEYWQGKATERRNVATIRDSL
PERYHEYLQFDPTAVSDRDLYEWVTGGKGESHLRKDAIREAFDGGEIEDVFDRLSDLRPD
SGDRNTDLDYLVGREAHGYYVDMLFAQQYARWNRAVMSDRICEVIGVEPVERFQSIHNYV
DFRDLTIRKGATPAREGQRLIVPFNMAEGSLLARGRGNDEWHDTAPHGAGRVMGRGEAHR
TVDMDEFEAAMEGVYSESVVESVRDEAPMAYKSADAIADAIEPTAEVEDWLDAVHNLKAK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaactgacgggtgaccacaccacggcccgggtcatggtcgaggacgagtcgctg
gtcgaggagaactgcctcgaccagatccggacgctgatcgaccaccccgcgttcaccgaa
ccggtccgcgtgatgccagacacccactggggagccggcgcaccgatcggcttcacgatg
ccactcggcgagcgcatcgtccccaacatcgtcggcgtcgacgtgggctgtgggatggcc
gcgacgaagttgggctcgacgctcccgctctcggacgccgagcgcgaacgccgcgtgcgc
gaggcgattccgatgggccagaccgtccacgactacgacgacgcggtccacctggtagag
gagttccccttcgagcgggccaacgaggtcttcgaggcgttcgcggccagcttcgaggag
cggttcggcaccgcgatcgatcccctggagttcgacttcgagggctacgacgccgactac
ttcgagtcgctctgtgagcgggtgctggcccagcaacgccagagcatgggctacgtcatc
cgcggggtcgggacgctgggcggtggcaaccacttcgtggagttcgctcgcgcccagacg
accggggactactggctgatcgtccacagcggctcgcgatacctgggcaagtcggtcgcc
gagtactggcagggcaaagcgaccgagcggcgcaacgtcgcgacgatccgcgattcactc
ccggagcggtaccacgagtaccttcagtttgaccccacggcggtctcggatcgagacctc
tacgagtgggtcaccggcggcaagggcgagtctcacctccggaaagacgccatccgcgag
gcgttcgacggcggcgagatcgaagacgtcttcgaccggctgagcgatctccggcccgac
agcggcgaccgcaacaccgacctcgactacctggtgggccgggaggcccacggctactac
gtcgacatgctgttcgcccagcagtacgcccgctggaaccgcgcggtcatgtccgaccgg
atctgcgaggtcatcggcgtcgagcccgtcgagcgcttccagtcgatccacaactacgtc
gacttccgcgacctgacgatccgcaagggcgcgacgcccgctcgcgagggccagcgactg
atcgtccccttcaacatggccgaggggtcgctgctggcacgcgggcggggcaacgacgag
tggcacgacacggccccccacggcgcgggccgcgtgatgggccgaggcgaggcccaccgc
accgtcgacatggacgagttcgaggcggcgatggagggcgtctactccgagtccgtggtc
gagtcggtccgcgacgaggcaccgatggcctacaagtccgccgacgccatcgccgacgcg
atcgaaccgaccgccgaggtcgaagactggctcgacgccgtccacaacctcaaggcgaag
tag
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