Halomicrobium sp. ZPS1: GBQ70_13090
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Entry
GBQ70_13090 CDS
T07700
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hazp
Halomicrobium sp. ZPS1
Pathway
hazp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hazp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GBQ70_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hazp03021
]
GBQ70_13090
Transcription machinery [BR:
hazp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
GBQ70_13090
Prokaryotic type
Archaeal type
TFB
GBQ70_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
A2L_zn_ribbon
Sigma70_r4
DUF1272
Trm112p
DZR_2
DZR
HTH_Tnp_ISL3
Zn_ribbon_RRN7
zf_Rg
Zn_ribbon_tTFIIB
Motif
Other DBs
NCBI-ProteinID:
QFR21339
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All DBs
Position
complement(2538562..2539530)
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AA seq
322 aa
AA seq
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MTDTTIRRFTDETEHTEETEDESEHVCPECGGDLVADSERGETVCEDCGLVVEEDEIDPG
PEWRAFDASEKDEKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTW
NERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVA
TSSLYAAARQAGTPRSLDEISAVSRVEKDEIARTYRYVVRELGLEIQPADPESYVPRFAS
DLDLSDEVERRARQLLQNAKQQGVHSGKSPVGLAAAGVYAASLLTNEKVTQSEVSEVANI
SEVTIRNRYHELLEAEEEVQQL
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccaccatccgacgatttacggacgagaccgagcacacagaggagaccgag
gacgaatcagagcacgtctgtccagagtgtgggggcgatctggtcgccgacagcgaacgc
ggcgagaccgtctgtgaagactgcggactggtcgtcgaggaagacgagatcgaccccggt
cccgagtggcgcgcgttcgacgccagcgagaaagacgagaagtcccgcgtcggcgcaccg
acgaccaacatgatgcacgacaagggactgtcgaccaacatcggctggcaggacaaggac
gcctacggcaactccctgtcctcgcgccagcgcgagaagatgcagcgcctgcgtacctgg
aacgagcgattccggacacgcgactccaaggagcgcaacctcaagcaggcgcttggcgag
atcgaccgcatggcctcggcgctgggcctgcccgagaacgtccgcgaaaccgccagcgtc
atctatcgccgcgcgctcgacgaggacctgctgcccggccgctccatcgagggcgtcgcc
acctcgtcgctgtacgccgccgctcgtcaggccggcacgccgcgctcgctcgacgagatc
agcgccgtctctcgcgtcgagaaagacgagatcgcccggacctatcgctacgtcgtccgc
gagctcggcctggagatccagccggcagatcccgagagctacgtccctcgctttgcctcc
gatctcgacctctcggacgaagtcgaacgccgggctcgccagctgctccagaacgccaaa
cagcagggcgttcactccggcaagtccccggtcggcctcgcggcggccggcgtgtacgcc
gcgtcgctgctgaccaacgagaaggtcacccagagcgaggtcagcgaagtcgcgaacatc
tccgaggtcacgatccgcaaccgctaccacgagctgctggaagccgaagaggaagtccaa
cagctctga
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