Hyalella azteca: 108674516
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Entry
108674516 CDS
T07535
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19719
collagen type II alpha
Organism
hazt
Hyalella azteca
Pathway
hazt04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108674516
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hazt00536
]
108674516
Glycosaminoglycan binding proteins [BR:
hazt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108674516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
108674516
NCBI-ProteinID:
XP_018017963
UniProt:
A0A8B7NW32
LinkDB
All DBs
Position
Unknown
AA seq
1610 aa
AA seq
DB search
MGLLSRPILAALLLLWARTAHGRAEPQPDPKPQDYSTDNYDEENGAYDYEPYEEYPYENY
VDYNEGTETDTDPVETDTNGFDPYGAYDPYVVDTPGFDSAATEAPRYDPYATEAPRYDPY
ATEAPRYDPYATEAPRYDPYATEAPRYDPYATEAPRYDPYATPAPYDPYGRDRYDPYDPY
DRRTEPDTTTEPPTTTPTTSTTTTTTTTTTTPRPRRRPDRERNGRRRNGRRREQGGVKRE
REEGPDTVVSAVGPDGEYGTTGLPGQAGSPGDAGEPGAPGTPGTPGSPGPPGPMPDIAPW
LSQLSQSQGGEKGPQPDPFSYLQAQVGPMGQRGPVGPSGPAGPQGFQGIRGEPGEHGPVG
PPGPPGPRGMPGLSGKDGENGDDGAPGPPGVQGPPGPRGLPGMPGLPGAKGHRGFPGLDG
SKGEMGATGSKGSAGPGGPTGPVGAMGPAGPRGERGREGPPGPPGLRGIDGIAGPPGPSG
GPGKPGPPGFPGSAGAKGDQGVQGHKGSVGLQGPRGESGKPGSPGEQGPRGIPGKDGLNG
EKGAPGNQGDPGPPGFPGARGPPGLSGSPGVAGAKGARGLNGERGFKGDLGMKGEAGAAG
PRGLPGPAGSPGKRGKRGMAGPPGGIGPQGERGPPGGRGLPGADGPPGPKGGSGDPGVPG
PVGPKGRDGDPGAPGLPGAQGQRGPTGISGPPGKTGRPGDRGLPGADGKPGDQGPQGIQG
LPGPMGPPGARGLIGEPGKDGSPGDHGPPGPRGDAGKEGSQGPIGPPGPTGSPGERGAPG
PPGSRGFQGLPGTPGNTGAAGKDGEPGLQGAIGLPGAAGMRGARGFPGERGAQGPPGAAG
ARGESGMPGPDGPPGLVGSPGQKGHAGAPGLVGLPGTRGLPGLPGEKGERGALGLVGPEG
PPGREGKQGPQGIMGPRGPPGEPADKGDPGPPGPPGEPGANGMIGERGQQGPQGLQGFPG
PVGPGGPPGPKGQRGLPGSKGMQGNPGAVGLPGSQGPQGLAGLTGAKGQRGLSGERGEPG
LMGPPGRPGKDGLPGAPGNTGLPGVPGNPGIKGASGDTGRPGLPGPSGQPGAPGPEGIKG
EAGPEGRVGPLGQPGPAGAAGERGLPGLPGNQGPPGLRGPQGAPGEQGTEGKRGAEGPPG
PTGMPGPIGPVGPVGETGSPGADGKPGPPGLSGRTGDKGPQGAPGRQGGAGPPGLPGPPG
SAGPIGPTGERGERGESGPQGVEGPPGVRGKPGAPGPQGDKGDTGSAGPKGSKGHNGLIG
LQGLPGPIGQPGEKGPPGSVGPAGPPGEPGQKGPPGRDGGIGLQGIMGPPGPRGPSGEEG
KSGPPGAPGPAGPPGPPGESMGYDAAALAALLGQGQTKGPDPLQGDDSTLPARILGREIS
EDERRELIVKAYEQLKTSFKKYLKPTGSKEAPAKTCKDLNFAHPELPSGEYWVDPNEGSV
NDAIVVHCDMDQRSTCVLPQPGMTQEFNWQGDPQGIVWLGDTIQPDQEFTYKVDSNQMAF
LQLLSSKASQKLTYHCKNSVAVFDANNRNFRNSLRIMTSSDLELNARGNKKVRYSVLEDG
CKTRSNNWSSTTVIYETDRPQRLPFVDIGMRDIGQRNQFFKVEIGPVCFI
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggggctgctctcacggccgatcttggccgccctcttgctgctctgggcacggacggcg
cacggcagagctgagccccaacctgatcctaaaccccaggactacagcacagacaactac
gatgaagagaatggcgcgtatgactatgagccgtacgaagaatatccgtatgaaaattat
gtagattataatgaagggaccgaaacggataccgatccggtcgaaacggatacaaacggt
ttcgacccttatggtgcctatgatccgtacgtagtggatacaccagggtttgattcagcg
gcaacggaagccccaaggtatgacccgtacgcaacagaggctccaaggtacgacccgtac
gcaacggaagctccaaggtacgacccgtatgcaacggaagctccaaggtacgacccgtac
gcaacggaagctccaaggtacgacccgtacgcaacggaagctccaaggtacgacccgtac
gcaactccagctccttatgacccgtacggtcgtgatcgatacgatccgtacgacccgtat
gacagacgtacagaacctgacacaacaacagaaccaccaactactacgcctaccacctct
actactacaaccactactaccacaacaaccactccgagacctcgtcgtcgaccagaccga
gagcggaatggtcggagaagaaatggacgtcgaagagaacaagggggtgttaaaagagaa
cgtgaagagggccccgacactgtagtatctgcagttggccccgacggcgaatatggaacc
actggacttcccggtcaagccggttcacccggagacgctggagaaccgggtgcaccggga
acccctggaacccctggaagtcccggaccacctggacccatgccagatatcgcaccttgg
ttgtcgcaattgtcccagtcccaaggaggagaaaagggaccacaacctgacccgttcagc
tacttgcaggcccaagtgggccccatgggacagcgaggccctgttggtccttctggtccc
gctgggccccagggtttccagggcatcagaggcgagcctggcgagcacgggccagtgggt
ccacctgggccacctgggccacgaggcatgccggggctcagtggcaaagatggagaaaat
ggcgacgatggagcaccgggtccccctggggtccagggcccccctgggccacgaggcctg
cctggcatgccgggtctgcctggggccaaagggcaccgcggcttcccaggcttggacggg
tctaagggcgagatgggggctactggaagcaagggctccgctggacccggcggccctact
ggacccgtgggcgccatgggcccagctgggcctcgtggagaaagaggccgtgagggaccg
cctgggccacctggattgcgaggcattgatggcattgctgggcctccgggcccctctgga
ggaccaggcaaaccgggcccaccgggcttccctgggtcagctggggccaagggcgaccag
ggcgtgcagggccacaagggctccgtgggtctccagggcccaagaggcgagtcaggcaag
ccaggttcgccaggcgaacaaggccctcgaggcatcccaggcaaggatggcctcaacgga
gaaaaaggcgccccaggaaaccaaggcgaccctggcccccctggcttccctggggcgcgt
ggcccccctggactctctgggagcccgggcgtcgcgggggcaaaaggcgcgagaggtttg
aatggggaacgcggcttcaaaggagacctcggcatgaaaggtgaagccggggctgcgggt
ccccgcggtctgcccggacccgcgggctcccccggaaagcgcgggaagcggggcatggcg
gggcctcccgggggcatcgggccccaaggggagcgtgggcctcctggaggtcgtggccta
cctggtgcagatggaccaccgggaccgaagggcggctcaggagacccaggcgtccctgga
cccgtgggtcccaaagggcgtgatggagatcccggagcaccaggtctccccggggcccaa
ggccaacgtggccctacaggaatttcgggcccacccggcaagacaggacggccaggagat
cgaggcctcccaggggctgacggcaagcccggggaccaagggcctcaaggcatccaaggc
cttccaggcccaatgggaccaccaggggcccgaggacttattggtgagcccggaaaagac
ggatctcccggagaccacggaccacccggacctcgaggcgacgctggaaaagaaggttca
caaggcccaattggccctcctggccctactgggtcaccaggtgaaagaggagcaccggga
ccacctggatcgagaggcttccaagggttgcctggaactcctggaaacaccggagctgct
ggaaaggacggagaacctggactacaaggagctattggtcttcctggggccgcaggaatg
aggggtgcacgtggcttccctggagaacgaggggcccaagggccacctggagcagctgga
gctcgaggagaatctggaatgccgggacccgatggcccacctggtcttgtcggcagccct
ggacagaagggacacgctggagcacctggtttggtgggtcttcctgggactcgtggtctc
ccaggattgcctggagagaaaggagagcgtggggcccttggactggtaggccccgaaggc
ccacctggaagggaaggcaaacaaggacctcaaggtatcatgggccccagaggtcctcct
ggagagcctgcagacaagggagatcctggccctcctggaccacctggagaacccggagcc
aatggcatgattggtgagcgcggtcagcagggccctcagggtcttcaaggcttccctggc
ccagtcggacccggtggtcctccgggtcccaaaggtcaacgaggtcttcctggtagcaag
ggaatgcaaggcaaccctggcgcggtgggacttcctggaagccagggacctcaaggtctt
gctggccttactggagctaaaggccaacgtggcctctctggtgagagaggtgaacctggc
ctcatgggcccacctggacgacctggaaaagatggcctccctggcgctcctggcaatact
ggactacctggagttcctggaaaccccggcattaagggcgcgtctggagatactggacgt
cctggattgcctggcccatcaggacagcctggagcacctggacccgaaggaattaagggc
gaagctggacctgaaggtagagttgggccccttggtcaaccgggtcctgctggagctgct
ggagagcggggactgccaggtctgcctggaaaccaaggcccacctggacttagaggacct
caaggagcacccggtgaacaaggcacagaaggcaaacgcggtgcagaaggccccccagga
cctactgggatgcctgggcccatcggtccagttggccccgtgggcgagaccgggtcccct
ggagcagacggcaagcctggcccgcctggactgtctggacgaactggtgacaaggggcct
cagggagcacctggacggcagggaggagctggacctcctggactgcctgggcctcctggt
tccgccggtcccattggccccactggagagagaggggagcgcggtgagagtggccctcag
ggagtcgaaggccctcccggagttcgaggtaaacctggtgcccctggccctcaaggagac
aagggcgacaccggaagtgccggacccaagggttccaaaggccacaacgggcttattggt
ttgcaaggtttgcccggtccaattggtcaacctggagaaaaaggcccaccaggttccgtg
ggtcctgctggtccacccggagagcctggccagaagggtccgccaggtagagatggaggt
atcggactccaaggtatcatgggaccacctggaccgcgaggtcccagtggagaggaaggt
aaaagtggaccacctggtgcaccaggtcctgctgggccccctggtccacctggagagtct
atgggttatgacgcggcagctttggcggctcttcttggacaaggccagacgaagggacct
gatcctctgcaaggcgatgactcgacacttcctgcgcgaatcttaggccgggaaataagc
gaggatgaaaggagagaacttatcgtaaaggcctacgagcaactcaagacttcgttcaag
aaatatcttaagcctaccggatccaaagaagctcctgccaaaacgtgcaaggatttgaac
ttcgctcatcctgaactaccaagcggcgagtactgggttgatcccaacgaaggaagtgtc
aacgacgcgattgtggttcactgcgacatggaccaacggtcgacatgcgttcttccgcag
cccggcatgactcaagagtttaactggcaaggagacccacagggcatcgtctggttaggc
gacaccatccagcctgaccaagagtttacctacaaggtggacagcaaccaaatggcgttc
ctccagcttctctcatccaaggcgagtcagaagttgacgtatcactgcaagaactccgtc
gcggtcttcgacgccaacaacagaaacttcaggaactctttgaggatcatgacgtcttct
gacctcgagctcaatgctcgtggtaacaagaaagtccgctattctgtgctcgaggatgga
tgcaagacgcggtccaataactggtcttcgacgacggttatatacgagaccgacaggccg
cagcgcttgccgtttgtggacatcggcatgagggacatcgggcagcgcaaccagttcttc
aaagtggaaatcggaccggtctgcttcatttag
DBGET
integrated database retrieval system
