Hyalella azteca: 108674534
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Entry
108674534 CDS
T07535
Name
(RefSeq) uncharacterized protein LOC108674534
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hazt
Hyalella azteca
Pathway
hazt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108674534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hazt03021
]
108674534
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108674534
Transcription machinery [BR:
hazt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108674534
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108674534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
108674534
NCBI-ProteinID:
XP_018017984
UniProt:
A0A8B7NW28
LinkDB
All DBs
Position
Unknown
AA seq
2265 aa
AA seq
DB search
MDSHPEASEVAHDYKEALADLNSSKPQITFLTMLADENKEHAAVIVSAIQEYAHSCPQVQ
KLPCLYLVDSIIKNVKEDYIKLFQLKVHHLFAHIFEKVDERTRRKMYELRQTWNDIFRKS
TLYGLDVKVQALDPAWPVTAPTPSASVPSQSSRAKPSTIFVNPTLLKSRGLSASGAEVGA
LPKELDMELKKKLALEKKQAMATVEKPAEKQSSGISSSSSSSLSKPTAWPSEASEAFPPA
VPDTAKASVRIDRKPTGSSSSSGSSSRSTDKSSSREHWLKSYKIKKKSTDSDASSSSQKP
SSSSQKPSQSPLATLPEPRRPPQATPPVKPQRVPTPTLAPHASPATTAEKHAPSRDPRAQ
SHDPRASSQDPRASSQDSRASSQVPRASSQDSRASSQDSRASSQDPRASPHASPATTAEK
HAPSRDPRAQSHDPRASSQDPRASSQDPRASSHCAIPAATSSRDPRLGTARPVERPSSMH
AIHPLKSATARSSNSSRDPRVVGKSRNISSRSLSKEIAEEANQLFKPDVLTKVPTKIKID
LKVFDASKSKPQVPVTSNRDPRIMSRDPRLAPKDEIKPSEVATLPPSSSVPASSSTSEAP
SKKEPSASATKDTSKMRDKSNDRREEIQRELKKVDRKEKQRVENRSSSPRSSNKVERSQS
PTKHRESSAHRSKDGRSSSKSSTHEQKKRDSPNVGSLIKSNSFVDTNDSKTGPPKDSQKT
SALKTSSTHVTPAEASNVSVQSDAGSSKSEDLKASITTTTTSGPGPNEESKPALSTDNKA
IPDEPSTTSSAKDSFRNVDRSLSRHRQHLRKRATPSPEPMEISPPPEIFSKENQEKKKEN
PEDGTDSDESDHYEANKPNPLIYMDKKGDVDLRLMGACAPGKSLPPADTSAAGPEPDDDL
FGSTDVDLRTQVLPAAFQEGAAVTAGGLSVAREDQDLRKPGPAVVKPDLPVNDVTKEAPD
DPEILIVEHKTHPSNWAKFREKNPEFKQFQRSCSTPSLPDTSVPAMQHSLSRARAIKKSL
FGDDDGQLLSNEAMLADSAGLKVIITQAEEQLRLGQISIAAYNNTLQQVLAVYERDKMRR
AQARDRSCSPAPIRDHQAVSPHIRSPAEKSNLLPPPPLPPQLRGPLDKGRSPLPPPPRPD
LDRGSYHRDLPPVDGSFRPDYYAHDEWTGEPDLPVVPEEVLRQVTRESETRKIDIDGYSR
DIRTYGETAILLMDAFDPRTVAFEEGHCNIVFDGGEFVIPMNTNDDYKEFTIEGETHRVK
LGVPTAELFLDGRGYQCFFGGKPITIHLAGRVRTIRLDGRPPSVTIGKETNRDFLLGKIS
LVVNANTKRMMPVYLDAKPQRITIDGKIHVLKFVNKFLTVNINTVNFPVSYGGLPTSVSV
RQIRKYLSFSALPPDIIPGETTVIGMDCDVLIPNYPALTRSLYQTTGRLANKYNKGALQP
PPTPPSSLAAFSKLPSTPQPPFPVAPEVPVTKTSIPMSAPPPFPTLSPSPKGAATEAKTS
AVVPGAYITNEGPSQSPPPRSVTPRAVTPSPAPSSGLPSLDVSSLLQTLIKVGIIGKPNA
TEPPKDASSDAKESSVTSVSKATQDSSVTEVSSAKETSITPSIQVKKMEDLKAKPKKPVA
IDVNDEDWLEPEEGAEPKPSSVAKMDSLFKSQQLRRRSSPLVAYLYRGMQCSSCGMRYPA
EQTVHYSQHLDWHFRQNKREQESTKKANTRKMYIPLDDWMQYEEIEDVDERVPSMFENES
GAGGAGLLRDTSRDEDEETEASVPVDSEEPGLGVCPVCRDTFSQFFQHHTDEWHYRNAVA
RDGANYHPSCYQDLVKDTQKEREENAKRAKEEAEEKERLEAQQKQENEMKDVKDDDKEVV
VPADVSAQEEVSSNSEPVTTTAAAAAAAADLIGTSAGSGDGIVSAAVAASSAAPEADPAK
TDLDPTKTVTDPAANVPAPVSLSTDPTVAAPDLPAPKDPAEPAIDSPVPDPAMPPTDSTT
SPADCVAASTPASADAVAAPATPADAEGDSLQSANSSAQPKKKKKKKKKKPVVQMHVPAV
RIKEEPLDAIEITQSGSFVDGVFVKQEKPDEPEIEEHPLDEGIEVMDQSAAEDEASMILD
TTGDMSASRSTLLTSTIDGNVEENEAPDTNPATAPLPRIRLSGALGGLLAKATNKDIPAD
SAEKSAITVIGDDSNLATDGTSSPTSQEKTNDGKDSSTNANENGVAEDEGVEGVDSDDDI
IEWDEFIPPPFTPDLKLHPRFENAQLDDQGIRRAGLEMSGLCSVM
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atggatagccaccctgaggcctcagaagtagcacatgactacaaagaagctctggctgac
ctgaacagctccaagcctcaaataacattcttgacaatgctggctgatgagaacaaggaa
catgcagctgtaattgtctctgccattcaagaatatgctcattcgtgtccccaggtgcag
aagttgccttgcttatacctggtggactctatcatcaaaaatgttaaagaagactacatc
aaactcttccagctgaaagtgcatcatctttttgctcacatttttgaaaaagtggatgaa
agaactcgtcgcaagatgtatgaactgcgccagacttggaatgatatattccgcaagtct
actctctatggattagatgtgaaggtccaggccctggacccggcatggccagtcactgct
cccactccttcagcttcagtccctagtcaatcttctcgtgctaaaccaagcactattttt
gtgaaccctacccttcttaagagccggggcttgtctgcctcaggagctgaggttggtgcg
ctcccaaaggagctggacatggaattgaagaaaaagcttgccctggaaaaaaaacaggct
atggcaactgtagagaagcctgctgagaagcagagctctggcatcagcagcagcagcagc
agcagcttatctaagccaactgcctggccaagtgaagcttctgaagcgtttcctcctgct
gttcctgatacggctaaagcttctgttcgtatagaccggaagcccactggcagcagcagc
agtagcggtagtagctcccgcagtacggacaaaagctccagccgtgagcattggctcaaa
agttacaaaattaaaaagaaatcaaccgactccgatgcatctagctcctcacaaaagcct
tcttctagctcccaaaagccgagccagtctcccctagcgactctccctgagcctcggcgc
cccccgcaagccacaccgccagtcaagcctcagcgagtccccaccccgaccttagctccc
cacgcctcacccgcaactaccgccgagaaacatgctccatctcgcgacccccgagcccaa
tctcatgaccccagagcctcatctcaagaccctcgagcctcatctcaagacagtcgagcc
tcatctcaagtccctcgagcctcatctcaagactctcgagcctcatctcaagattctcga
gcctcatctcaagaccctcgagcctctccccacgcctcacccgcaactaccgccgagaaa
catgctccatctcgcgacccccgagcccaatctcatgaccctcgagcctcatctcaagac
cctcgagcctcatctcaagaccctcgagcctcatcacattgcgctattcctgcagccacc
agcagtcgagaccctcgtttggggactgcccggcctgtggagcgtccctctagcatgcac
gccattcatccgctcaagtcggcgactgccagatcttctaattcatccagagaccctcgc
gttgtaggcaaaagccgcaatatttcctcgcggtctctctctaaagaaattgctgaagaa
gctaatcagcttttcaaacctgatgtcctcactaaggttcccacgaaaataaaaatcgat
ctgaaagtttttgatgctagtaaaagtaagcctcaggtgccggtgacttcgaacagagac
cctcgaataatgtcccgggatcctcgtctagcacccaaagacgagatcaagccgtcggag
gtcgctacccttccacccagtagctctgttccagcgtcgtctagcacttcagaggcgcca
tctaaaaaagagcccagtgcttctgctactaaggatacttcaaaaatgcgggataagtca
aatgaccgtagggaagaaattcagcgtgagctgaagaaagttgacaggaaagaaaaacaa
cgtgttgaaaaccgctcttcttctcctcgttcatctaataaagtggaacgaagtcagtct
ccgacgaagcaccgtgaatcaagtgcgcacagaagtaaagatggacgatctagttccaag
tccagtacccacgaacaaaagaaacgagactcccctaatgtaggatcattgattaaatca
aactcatttgttgataccaatgactccaaaacaggacctcctaaggactctcaaaaaact
tctgcattgaaaacatccagtacacacgtcacgccggccgaggcgtcgaatgtctctgtt
cagtccgacgcagggtcctccaagtcagaggacctcaaggcaagtatcaccaccaccacc
acctctggtccgggaccaaatgaggagtctaaaccagcgttgtccactgataataaagca
attcctgatgaaccatctaccacctcaagcgctaaagactctttccgcaacgttgaccgt
tccttgtcgcgtcaccggcagcatctcaggaaacgcgctactcccagtcccgaacccatg
gaaatctctccacctcctgaaattttttcaaaagaaaaccaagagaaaaagaaggaaaat
cctgaagatgggactgactctgacgagagtgaccactatgaagccaacaaaccaaacccg
ctgatttacatggataaaaaaggtgacgtcgacttgaggctgatgggcgcgtgtgctcct
ggtaaaagcttgcctcccgctgacacgtcagcggctggccctgaacccgacgacgatttg
ttcggctcaacggacgtggacttgcggacgcaggtgctgcccgcggccttccaagagggc
gccgcagtcactgctggtgggctgtccgtcgccagggaggaccaggaccttcgtaagcca
gggcctgccgtcgtaaagccggatctaccagtaaacgatgttacaaaagaagctcctgat
gacccagaaattctcatcgtggagcacaagacacatccttcaaactgggccaagttcaga
gaaaagaacccagaattcaagcaattccagcgctcgtgcagcactccttctctccctgac
acaagtgttccagccatgcagcacagcctctccagagcgcgcgcgatcaagaaaagtctt
tttggagatgacgacggacaacttctctccaacgaggccatgctggctgattcagccgga
ctcaaggtgatcatcacccaagcagaagagcagctacgcctgggccagatcagcatcgct
gcgtacaacaacacgctgcagcaggtgcttgctgtctatgagagggacaagatgcggcgc
gctcaggcccgagacaggagctgcagccctgcccccatcagagaccatcaagccgtgtcc
cctcacatcagatcacctgcagagaaatcgaatctcctgccacccccacctctgcctcct
caactgcggggacctcttgacaagggaagaagtcctttgcctccgcctcccagacctgac
ttagatcgtggaagttatcaccgcgacttacccccggttgatggcagcttcaggcctgac
tattatgcccacgatgaatggactggagagccggacttgcctgttgtgcctgaagaagtt
ttacggcaggttaccagagagtcggaaactcgcaagattgatattgacggatattctcgc
gatatccgcacgtacggcgagaccgccatcctcctcatggatgccttcgacccgaggacc
gtcgcgtttgaggagggccactgcaacatcgtattcgatggcggcgaattcgtcattccc
atgaatactaatgacgattataaagaatttacaattgagggtgagactcatcgcgtcaaa
ttgggcgtaccgacggcagaacttttcctcgacggccgaggttatcagtgcttctttgga
ggcaaacccattaccatccaccttgctggccgcgtccgcactatccgcttggatggcaga
cctcccagcgttacaattgggaaagaaaccaatcgagatttccttcttggcaaaatctcg
cttgtggttaatgctaacacgaaacgcatgatgcctgtgtacttggacgcaaagcctcaa
cgaatcactattgacggaaaaattcacgtgttgaagtttgtaaataaatttttaaccgtc
aatatcaacacagtgaatttccccgtctcttatggcgggctacccacaagtgttagtgtg
cgccagattcgcaagtacctgagcttctctgccttgcctcccgatatcatacctggcgag
acaaccgtcatcggtatggactgtgacgtgctcattcccaattaccctgccctcacgcgg
tcactttatcaaacgacaggtcgtctcgcaaataagtacaacaaaggtgctttacaacca
ccaccaacacctccatcaagccttgctgcattctctaaacttccctcgactcctcaacct
ccattccccgtcgcacctgaagtccccgtgactaaaacctccatacctatgtcagcaccc
ccaccattccccacgctttcgccgagccccaaaggagctgcgactgaagcaaaaacatcc
gcagtcgtccctggcgcttacatcaccaacgaaggaccttcccaatcgccgcctccgcgt
tcagtcacccctagagccgtgacaccctcgccagcaccctcttcaggcttgccttctcta
gatgtgtcttctctgctgcagacgctcatcaaagtcggtatcatcggtaagcccaacgcc
actgaacctcctaaagacgcttcatccgacgcaaaagaaagctccgtcactagtgtgagc
aaggccacccaagacagctccgttactgaagttagctctgctaaggaaactagtataact
ccaagcattcaagtaaagaagatggaagaccttaaggccaagccaaagaaacctgttgcc
atcgatgttaacgatgaagattggctggagcctgaagaaggagcagagccaaaacctagt
agtgtcgctaagatggattccctgttcaaatcacaacaattaagaaggcgcagcagcccc
ctagtggcatatttgtaccgtggcatgcaatgttcgtcatgcggcatgcggtaccccgct
gagcagacggtgcattattcgcagcatctagactggcacttcaggcaaaacaagcgtgag
caagagagcaccaagaaggccaataccaggaaaatgtacattccactggacgactggatg
caatatgaggaaatcgaagacgtcgatgaaagagtgcctagtatgttcgagaatgagagt
ggcgctggtggtgcaggattgctacgcgacacttcgagggacgaggacgaggaaactgaa
gccagtgtgccagtggacagtgaagagcctggtctgggtgtgtgccctgtgtgccgcgac
accttcagtcagttcttccagcaccacacggacgagtggcactacaggaacgccgtcgcc
agggacggtgccaactaccatcccagctgctatcaggacctcgtcaaggatacgcaaaaa
gagagggaagaaaatgcaaaaagggcgaaggaagaggccgaggaaaaggaaagacttgaa
gcccaacaaaagcaagagaacgagatgaaggacgttaaagacgacgataaggaggttgtt
gtgccggcagatgtttcagctcaagaagaagtttcttctaactctgaacctgttactact
actgctgctgctgctgctgctgctgctgacctgattggcacctcggctggctcaggagat
ggaatagtttctgctgcagtcgctgcgtcatcggctgcacctgaggctgatcctgcaaaa
actgacttggatccgacaaagactgtcactgatcctgctgcgaatgttcctgctcctgta
tcacttagcactgatcctacagtggctgctcctgatctcccagcacctaaggatcctgca
gagcctgccattgattcgcctgtccctgatcctgcaatgcctcctaccgactccacgacg
tctcctgctgattgtgtcgccgccagcaccccggcatcagctgacgcggtagcggcgcct
gccactcctgcagacgctgagggcgactcattgcaatctgcaaattcttcggcacagcca
aagaagaagaagaagaaaaagaagaagaagcctgttgttcaaatgcacgtgccggccgtc
cgcatcaaagaagaaccgttggacgccatagaaatcacgcagtcgggatcttttgtggac
ggtgtcttcgtgaagcaagagaagcccgacgagcctgagatcgaggagcatcctctggat
gaaggaatcgaggtgatggaccagagtgcggcagaggacgaggcgagcatgatcctcgac
actacaggggacatgtcagcgtcccgtagcacacttctcacgtccaccatagacggcaac
gtcgaagagaacgaagctcctgacaccaaccctgcgacggcgcccctacctcgcatcagg
ctcagtggcgccctgggagggctgcttgccaaggccaccaacaaagacatccctgccgac
tctgctgaaaaatccgctatcaccgtcataggggatgacagcaatcttgccactgatggc
acatcttcccctacttcccaagagaaaacgaatgacggaaaagatagcagcacaaatgca
aatgagaacggcgttgcggaggatgaaggtgttgaaggcgtcgattcagatgatgacatc
atcgagtgggacgaatttatcccgccgcccttcacgccggacctgaagttgcatccgcgc
ttcgaaaacgcgcagcttgacgaccagggcatcagacgcgctgggcttgaaatgtcaggt
ctttgttctgttatgtga
DBGET
integrated database retrieval system
