Hyalella azteca: 108678339
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Entry
108678339 CDS
T07535
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hazt
Hyalella azteca
Pathway
hazt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108678339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108678339
03041 Spliceosome [BR:
hazt03041
]
108678339
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108678339
Spliceosome [BR:
hazt03041
]
Complex B
Other components
Prp19-related factors
108678339
Complex C
108678339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
NRDE-2
TPR_2
TPR_15
Mad3_BUB1_I
DUF7041
DUF6092
DUF5575_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
108678339
NCBI-ProteinID:
XP_018022209
UniProt:
A0A8B7P7R7
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MAVSNESSESSKPPAPNATTSTSKLETKKSQLTINIIADDLPYEEELIRNPFSVKHWLRY
IEHKKSCIKEELELPLEKRKFSDKDLHYLYERALLQMPMSYKLWSQYLKLRLLAMKDSCL
ASPAAESVNNTFERCLVFMHRMPRIWLLYLQFLMDQQKITRTRKTFDRALCALPITQHDR
VWDLYLKFVMMHDIPETAVRVWRRYLKLKPEDTEDYINYLVAQGRLQEAARQYEWCVNTD
AFASKYGKSKYQLWSELCDLLSNNPEETSLHNAEAIMRHGLQRYVDQTGRLWNCLAQYYI
KSALFERARDVYEEAMRSVMTVRDFTQVFDAYAQFEELLLSKQMEDAKLDDQLQQDDFNL
RLARYEDLIERRALLLNSVMLRQNPHNVIEWQKRVSLYASKPKMVVTTYMEAVKTIDPKQ
AAGKLWQLWVDFACFYENNGQLKDARLILEKATQVAYVKVDDLASVWCEWAEMELRNDNE
KQALQLLKRATAIPGARVDYHDESETVQRRLHKCLKLWSLYADLEESLGTFQSCKAVYDR
IIDLRIATPQIIINYGMFLQENNYFEEAFKAYEKGIALFKWPYVYDIWNTYLTKFLERYK
GSKIERARDLFEQCLEKCPAKYCKALYLLYANMEEQHGLARHALQVYSRATKSVPPDQKL
ELYNVYIQHASQLHGIAKTRAIYQEAIEELPDVGAREMCMRFAETERLLGEIDRAREIFV
YASELCDPRVTKEFWDKWTDFEVQHGNEDTMRELLRIRRSLQAKYSTQINQMSAQMLSSA
AAASTPAAAASADSMQALEARTAAAAPSAAAVTQPPGEARILFVRSDTSARDEEVAAAAR
VPNPEEINLDDEEEEEEEEDLPQPKAVPSEVFAGLK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggctgttagcaatgaatcttcagagtcaagcaagccacctgctcctaatgccaccacc
tcaacttccaagctggaaacaaagaagtctcagctcaccatcaatattattgcagatgac
ttgccttatgaagaagagctcatacgcaatccattctcagtgaagcattggctgcgttac
attgaacacaagaaaagctgcatcaaagaggaacttgaactgccacttgagaagcgaaaa
ttcagtgacaaagacctgcattatttgtatgaacgcgctctccttcagatgccaatgagc
tataagctctggagtcagtacctgaagctgcgcctcttggcaatgaaagattcttgtctt
gcaagcccagcagcagagagcgtcaacaacaccttcgagcgatgcctggtcttcatgcac
aggatgcctaggatctggctgctctacctacagttcctgatggaccagcaaaaaattacc
agaaccaggaagacttttgaccgtgccttgtgtgcgttgccaataacccaacatgacagg
gtatgggacttgtacctgaagtttgtgatgatgcatgatattcccgagactgccgtcagg
gtgtggaggaggtacctcaagcttaaacctgaagacactgaggactacatcaactatttg
gtggcacaggggcgcctccaggaggctgcacggcagtacgagtggtgtgtgaacaccgat
gctttcgcctcaaagtatggtaaaagtaaataccaattgtggagtgaactgtgcgatttg
ctatccaataacccagaggaaacatcactccacaatgcagaggccatcatgcggcatggg
ttacagcgttatgtggaccagacaggtcgtctctggaactgtctagcccaatattacatc
aagagcgccttgtttgaacgtgccagggacgtgtatgaggaagccatgcgcagcgttatg
accgtgcgcgactttactcaggtttttgacgcgtatgcccagtttgaggagctgctgctt
agcaagcagatggaggacgccaagctcgacgatcagttgcaacaggatgatttcaacctc
agactggcccgttacgaggatctgatcgagcgacgcgcgctgctgctgaacagcgtcatg
ttgcgccagaacccccacaacgtcatcgagtggcagaagcgagtgtccctgtatgcttcc
aaacccaagatggtcgtaaccacctacatggaggctgtcaagaccatcgaccctaaacag
gcggctggcaaactctggcaactgtgggttgactttgcttgcttctatgagaacaatggt
cagttgaaagacgctcgtctgatccttgagaaagccacacaggttgcctacgtcaaggtg
gacgacttagcaagtgtgtggtgtgagtgggccgagatggagctaaggaacgacaatgag
aagcaggccctacagcttctcaagcgtgccactgccataccaggagcccgcgttgactac
cacgacgagagtgagaccgtgcagcggcgtctgcataaatgtctcaagctttggtctctg
tacgcggacttggaggaaagtttaggcactttccagtcatgtaaggcggtttatgatcgc
atcatcgacctccgtatcgccactcctcaaatcatcatcaattacggcatgttcctccag
gagaacaattattttgaagaagctttcaaggcgtacgagaaaggcatcgcgctcttcaaa
tggccatacgtgtacgacatctggaacacgtacctcaccaagttcctggagcgctacaag
ggcagcaagatagaacgcgcgagggacctgttcgagcaatgccttgagaaatgtcctgcc
aaatactgcaaggcgctctacctcctctatgccaacatggaggagcagcacgggctggcc
agacatgccctgcaggtgtacagtcgcgcgaccaagagcgtacctcctgaccagaagctg
gagctgtacaacgtctacatccagcacgcctcgcagctgcacggcatcgccaagaccaga
gcaatttaccaggaagccatagaggagctgcctgacgtgggagcccgcgagatgtgcatg
aggttcgccgagaccgagcgtcttctcggcgagatcgaccgcgcgcgcgagatcttcgtg
tacgccagcgagctctgcgacccgcgcgtcaccaaagaattttgggacaaatggacggac
tttgaggtgcagcatggcaacgaggacaccatgcgagagctgctcaggatacgacggtcg
ctgcaggccaagtacagcacgcagatcaatcaaatgtcggcgcaaatgctctcttccgct
gcagcagcttctacacctgcagccgctgcctctgcagacagcatgcaggccttggaggcc
cgtacagctgcagcagctccctcagcagctgcggtcacacaaccacctggcgaggcgagg
atcttgttcgtgcgcagcgacacgagcgcgcgggacgaggaggtcgccgccgccgcccgc
gtccccaaccctgaggagatcaacctggacgatgaggaggaggaggaggaggaggaggac
ttgccacagcccaaggctgtacccagcgaagtctttgctggtctcaagtga
DBGET
integrated database retrieval system
