Hyalella azteca: 108678915
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Entry
108678915 CDS
T07535
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hazt
Hyalella azteca
Pathway
hazt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108678915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108678915
03041 Spliceosome [BR:
hazt03041
]
108678915
03009 Ribosome biogenesis [BR:
hazt03009
]
108678915
03016 Transfer RNA biogenesis [BR:
hazt03016
]
108678915
Enzymes [BR:
hazt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108678915
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108678915
Spliceosome [BR:
hazt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108678915
Complex C
U4/U6.U5 tri-SnRNP related factors
108678915
Ribosome biogenesis [BR:
hazt03009
]
Eukaryotic type
Pre-60S particles
Helicases
108678915
Transfer RNA biogenesis [BR:
hazt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108678915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Het-6_barrel
Helicase_dom4_arc
nSTAND3
Ada3
ATPase_2
ParB
Motif
Other DBs
NCBI-GeneID:
108678915
NCBI-ProteinID:
XP_018022900
UniProt:
A0A8B7PA94
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MACFGDEDIFDILETNDQALPEADVTEEADIIKAAAELKELLKRTSSDVNQKDSVVPRKK
VKKTLRNAELRLTEELPQIKVHTIETVDACTHEVAIPPHENYTPLEAPKHEPAKTYPFVL
DPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYSIAMCLANKQRVIYTTPIKALSNQKFR
DFSEEFTDVGLMTGDVTINPNASCLIMTTEILRSMLYRGSEVTREVGWVIFDEIHYMRDK
ERGYVWEETIILLSPTVHFVFLSATIPNASQFAQWIVYLHHQPCHVVYTDYRPTPLQHYI
YPAGGEGMYLVVDEKGVFREDNFNTAMSILQSAPEQQNQAFGSVSGGGSSSSMQKKKPTS
GNSECLKLVKTVMERNMAPVIIFSFSKKECEAFALQISKLDFNLPQEKQLVDEVFTNATA
VLSDEDKQLPQVVSVLPLLRRGIGIHHGGLLPIIKETVEILFGEGLIKALFATETFAMGL
NMPARTVLFTSTRKFDGQDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLDSAIAK
NLVQGKADPMNSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNFLNIPSICEKVEKAE
KANEDIEVPDHELVEGYYKMKQNIDNLLLERHTFITRPAHILPFLQPGRLVKIKNGADDF
GWAVVLKYDKKDNKKDPTAAPTITVDVIMTVSKVTADKKITSLLAPALAGERSVAVVVPV
LLRLVQELSAVRLKLPADLSSPDHRTVVMKMAQEAIKRVPEDQFLLDPVTNMKIKDETFM
TIVSKLKKLQKRLAEHALNVDPRKDKLLALFEQKMQAQANLKVAEAELRAAKSVLQLEEL
KCRKRVLRRLGYATAQDVIEKKGRVACELSAADELLITEMLFNGLFNDLTAAQTCSLLST
FVCDEKSSEMPKLGDELSGPLRQMQEMARRIAKVVQECKLDIVEEEYVEKFKPFLMDVVY
DWCNGSSFLEICKKTDIFEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFAEGVKLLKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgttttggggatgaagacatttttgatattttggaaactaatgatcaagcactg
cctgaagctgacgttactgaagaggccgatattatcaaagctgctgctgagttgaaagag
ctcttgaagagaacttcaagtgatgtcaatcagaaagattctgttgtaccgagaaagaaa
gtgaagaagaccctgaggaatgcagaattaaggttaacagaggagctgccacagatcaaa
gttcacaccattgagacagttgatgcctgcacacacgaagttgccattcctccccatgag
aactacacgcctctcgaggcccccaaacatgaaccagccaaaacctacccatttgtgttg
gatcccttccagaaagaggccatcttgtgcattgacaacaaccagtcagtgcttgtatca
gctcacacttctgcaggcaaaactgttgtggcggaatactcgattgctatgtgcctggca
aacaaacaaagagttatttacacaactcccatcaaggctctgagcaatcagaaattcagg
gacttcagtgaagagtttactgacgtggggctcatgacaggggacgtgaccatcaaccct
aatgcctcatgtctcatcatgaccactgaaattttgcgttccatgctctacagaggctcg
gaagtcaccagagaagttggctgggttatatttgatgaaattcattacatgagagacaag
gaacgaggatatgtttgggaggaaaccatcattcttctaagtcccaccgttcactttgtt
ttcttgtctgcaaccattccaaatgccagccagtttgcgcagtggatagtatacttgcac
catcagccatgtcacgtggtgtatacagactaccgaccaacaccactgcaacactacatt
taccctgctgggggtgagggaatgtatctcgttgttgacgagaaaggtgtcttcagagaa
gacaatttcaacaccgccatgtctatcttgcagtccgccccagaacagcaaaaccaagcg
ttcggcagcgtgagtggaggaggcagcagcagttccatgcagaagaagaagcccacgagt
ggcaacagtgaatgtctgaagctcgtcaagacggtcatggagaggaacatggctcctgta
ataattttcagcttctctaagaaagagtgtgaagcatttgctctgcagatatccaagctg
gacttcaacttgcctcaagagaagcagcttgtagacgaggtgttcaccaacgccacagcg
gtgttgtctgacgaggacaagcagctgccgcaggtcgtgtccgtcctgcccttgctcagg
cgtggcattggaatccatcacggcggcctcctgcccatcatcaaggagacggtggagatc
ctcttcggtgaaggtctgatcaaggcgctgttcgcgaccgagacgttcgccatgggcctc
aacatgccggccaggacggtgctattcaccagcaccaggaagtttgatggccaagacttc
agatggctgacgtcaggcgagtacatccagatgtcaggacgagctggacgacgtggcaag
gatgacaagggcatcgtcatcatgatggttgatgagaaactcgactctgctatcgcgaag
aatctcgtacagggtaaagctgatcccatgaactcggccttccacctcacctacaacatg
gttttgaacttgctgagagtggagcaaatcaaccctgagtacatcttggaacgatctttc
ttccagttccaaaacttcctgaatattccatcgatatgtgaaaaggtcgagaaagcggag
aaagccaacgaggacattgaggtgccagaccacgagcttgtcgaaggttactataaaatg
aagcaaaatattgataacctgctgttggagcgccacaccttcatcaccagacctgctcat
atcctgcccttcctgcaaccaggcaggcttgtcaaaatcaagaacggggctgacgatttt
ggctgggctgttgttctgaagtacgacaagaaggacaacaagaaagacccaactgctgcc
ccaactatcaccgttgacgttattatgaccgtatctaaagtaacggccgataaaaagata
acgtctctgctggccccggcattggcaggagagcgcagcgttgctgttgtggtgcccgtg
ttgctgcgcctcgtgcaggagctcagcgccgtcaggcttaagctgcctgccgacctcagc
tcccctgaccaccgcactgtcgtcatgaagatggctcaggaagcaatcaaacgagtgccg
gaggatcaattcttactcgacccagtcaccaacatgaagatcaaagacgaaacgttcatg
accatcgtcagtaaactcaagaaattgcagaagcggctggccgaacacgccctcaatgtt
gaccctcgcaaagataaacttttggcgctgtttgagcagaaaatgcaggcgcaagcaaat
ctgaaagtggcggaggctgaactacgcgcggccaagagcgtcctgcagctggaggagctc
aagtgccgtaagcgcgtcctgcgccgcctcggctacgccaccgcccaggacgtcatcgag
aagaagggacgagtcgcttgtgaactttctgctgccgacgagctgctcatcactgaaatg
ctcttcaacggccttttcaatgacctcactgctgctcagacttgttccctgctgagcacc
ttcgtgtgcgacgagaagagcagcgaaatgcctaaactcggcgacgagctctcgggacct
ctgcgccagatgcaggaaatggcacgtcgcattgccaaagttgtgcaagaatgcaagctc
gacattgttgaagaagaatacgttgaaaaattcaaacctttcctcatggacgttgtttat
gactggtgcaacgggtcgtctttcttagaaatttgcaagaaaaccgatatttttgaagga
agtatcataagagcaatgcgtcgcttggaggaactgctgcgtcagatgatccaggcagct
aaggccattggtatcgacctcgagaacaaatttgccgagggagttaagcttctcaagaga
gacatcgtctttgccgccagtctgtatctttaa
DBGET
integrated database retrieval system
