Hyalella azteca: 108679865
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Entry
108679865 CDS
T07535
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hazt
Hyalella azteca
Pathway
hazt03013
Nucleocytoplasmic transport
hazt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108679865
03015 mRNA surveillance pathway
108679865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108679865
Enzymes [BR:
hazt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108679865
5.6.2.5 RNA 5'-3' helicase
108679865
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108679865
mRNA cycle factors
Common to processing body (P body) and stress granule
108679865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
ATPase
AAA_22
NPHP3_N
nSTAND3
SRP54
AAA_16
AAA_7
TraI_hel_assoc_N
PhoH
AAA_5
Motif
Other DBs
NCBI-GeneID:
108679865
NCBI-ProteinID:
XP_018024083
UniProt:
A0A8B7PDB0
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MDPYGPSSQSLTFFEPDEPDLNIIGAETQDSEFDFHLGASQTQNLTDIYGNSQSQHGGDD
LLALAKVTEELKQLQFEEEEEDEEVPLDESKSQDLPEWACQYCNLHDPKSVVHCNVCKKW
FCNGMGTSTGSHIITHLVRAKHKEISVHKDGLVADTVLECYCCGVKNIFVLGFIPAQAES
VVVLMCRQPCAGRNNLKDMNWDPEQWRPLVSNRSLLDWIVRVPTTEEQLRARQISPQQMA
MIEDLWKENPKATFEDLTKPGVDEEIQNVCLKYESGYQYASIFTPLLNLEADFDKKLKES
QTTDKIDVRWDVGLNKKICAYFSVPKNDNDIRLMHGDELRIRYLGDPQHPWTGVGQVIKI
PDSISDEVGLELKSGHNAPTGCRDKFVIDFVWKSTSFDRMKQALRKFSLDNTAVSAYIYH
RLLGHLETEEVLLKHCKMPKTLSAPNLPTLNNSQQFALKHALQRPLSLIQGPPGTGKTVT
SASLVYQLAKQSTGQVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVAFLSL
HNQIRNMPDSAEFKKLQLLKDETKELSYNDEERYRTLKKQAEKTLLEAADVICCTCVGAG
DNRVSRMKFHTILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLNIKPFRLTVQYRMHPLLAQFPSNFFYEGSLHNGVVAADRTMKGLNFPWPV
PDHPMFFYVMSGQEEIAGSGTSYLNRTEASIAEKIVTKFIQGGIEPDQIGVVTPYEGQRA
YLCQYMKQQGTLNEKLYQRVEVASVDAFQGREKDFIIMSCVRSNDHQGIGFLADPRRLNV
ALTRAKYGLIIIGNPKLLSKQPLWNNLLYHFKDKHLLVEGALSNLQESLMMFSKPKRMVN
LANPGSHFMSRVTYDAREVIVPGSAFEKSSRLMRNAAGPAVNGTMNGNMAMTQQRQHGAP
PPPQHFYTGAHMNAYNKGNLIHDPVDYIPNEASQANLSGFPMPVNMFMNMNHMPLPRMYQ
QQQQMGNSGRTNGRLGESGRAGGGSKSQSSYAGGLSQEQLTAASQGLSQGFTQGLSQGGM
LGLGSGLSQGIGSQDYAGAMDGFGPVGMMLSQDDPGARGQSQRYNSSSSSHQPY
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggatccatacggtccaagttctcagagcttgacattttttgagcctgatgaacctgat
ttgaatataattggagcagagactcaagattccgaatttgatttccatttgggagccagt
caaactcaaaacttgactgatatatatggaaactcacagtcacaacatggaggagatgac
ctccttgccctggccaaagtcactgaagagctgaagcagctccagtttgaggaggaagaa
gaagatgaagaagttcctttagatgagtctaagagccaggatcttcctgaatgggcctgc
cagtactgcaacttgcatgacccaaagagtgtagtgcactgcaacgtctgcaagaaatgg
ttctgcaatggcatgggcacctcaactggttcccacatcatcactcatcttgtcagagcc
aagcacaaggagatcagtgttcacaaggatggcttggttgctgacacggtgctggaatgc
tattgctgcggcgtcaagaacatctttgtacttggcttcatcccagcccaggctgaaagt
gttgtggtgttgatgtgtcgtcaaccatgtgctggacgtaacaacctcaaggatatgaac
tgggacccggagcagtggcggcctctggtgagcaacaggtccctgctggactggatcgtg
cgggtgcctacaactgaggagcagctgcgagctcggcagatctctcctcagcagatggct
atgattgaagacttgtggaaggaaaatcctaaagctaccttcgaagatctgaccaagcct
ggggttgatgaagaaatccagaatgtttgtctcaagtatgagagtggctaccaatacgca
agcatcttcactccattgctgaaccttgaggcggactttgacaaaaagcttaaggaatca
caaaccacggataaaattgatgtgcgttgggatgttgggctcaacaagaaaatttgcgcc
tacttcagtgttcccaagaatgacaatgatattcgcctcatgcatggcgatgagctccgc
atacgctacttgggcgatcctcagcatccatggactggagtgggccaggttatcaaaata
ccagacagtattagtgacgaagttggtctggaattgaaatctggccacaacgctcccacc
ggctgccgcgacaagtttgttatagactttgtgtggaagagtacgagctttgatcgcatg
aagcaagctctacgcaagttctccctggataatactgcagtgtcagcttacatttaccat
cgattgctggggcatttggagacagaagaagtgttattaaagcactgcaagatgcctaag
acgctcagtgcacctaacttgcccactctcaataactcccagcagtttgccttgaagcat
gcgctgcagagaccgctgtctctcattcaaggtcctccaggcacgggcaagaccgttacc
agtgccagtttagtgtatcagttggccaagcaaagtacagggcaagtattggtttgcgct
ccctcaaacacggctgttgaccagctaactgaaaaaattcataagacaggactgaaagtc
gtgcgtctatgtgccaagtcacgagaagccattgactcgcctgtagccttcctgtcactt
cacaaccaaatccggaatatgccggactcagccgagtttaagaagctacagctactcaaa
gatgagaccaaggagctttcgtacaacgatgaagagcgctacaggacgcttaagaagcaa
gccgaaaagacactactggaggctgctgacgtgatctgctgcacgtgtgtgggtgccggc
gacaatcgcgtgtcgcggatgaagttccacaccatcttgatcgacgagtccatgcaggcc
actgagcctgagtgcatggtgcctgtggttctgggcgcaaagcagctgatcctggtaggc
gatcactgtcagcttggtcctgtcgtgatgtgcaagaaagcagcgaaggcgggcctgtcg
cagtcgttgttcgaacgcctcgtggtgctcaacatcaaacccttccgcctcaccgtgcag
tacaggatgcacccgctgctggcacagttcccttctaacttcttctatgagggatcgctc
cacaatggcgttgtcgccgctgatcgtacgatgaagggcctgaactttccatggccagtc
cccgaccacccgatgttcttctacgttatgtcgggccaagaagagatcgcaggctctggt
acatcttacctcaacagaactgaggcttcaattgctgagaaaatcgtcacgaaattcata
caaggtggcatagagcctgatcagatcggcgtggtcactccctacgagggacaacgagcc
tatctgtgccagtacatgaagcagcaaggaaccctgaacgaaaagctgtaccagcgagtg
gaggtggccagcgttgacgcgttccaggggcgcgagaaagacttcatcattatgtcgtgc
gtgcgctcgaatgaccatcaaggcatcggcttcctggccgatcccaggagactcaacgtg
gctctcacgcgcgccaaatatggactaataatcatcggaaaccctaaattgctttctaag
caaccgttgtggaacaacctgctctatcatttcaaagacaagcacctgctcgttgaagga
gccttgtctaacttgcaggagtcattgatgatgttcagcaagcccaagcgcatggtgaac
ttggccaaccctgggagtcatttcatgagtcgagtgacgtacgatgctagggaagtgata
gtgcctggctctgctttcgagaagtcgtcacgtctcatgcgtaacgctgcaggacctgct
gtcaatggcaccatgaacggcaacatggcgatgacccagcaacggcagcacggagcccca
cctccaccccagcacttctatactggcgcgcacatgaacgcgtacaacaaaggcaaccta
atccatgaccccgtggattatattcccaacgaagcatcccaggctaacttgagtggcttc
cccatgcctgtgaacatgttcatgaatatgaaccacatgccgctgcctagaatgtaccag
cagcaacaacagatgggcaactctggacgtacgaacggacggttgggagagtcaggacgt
gcgggcggaggcagtaagagtcagtcgagctacgcaggcggcctgtcgcaggaacaactc
acggccgcctcacaggggctctcccagggcttcacccaaggcttgtctcagggtggcatg
ttgggcctcggcagcggtttgtcccaaggcattggatctcaggactatgctggagccatg
gacggcttcggacctgtgggcatgatgctctctcaggatgatcctggggcacgtggacaa
tcccagcgctacaattcttcctcctcatcccatcagccatactga
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integrated database retrieval system
