Hyalella azteca: 108679945
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Entry
108679945 CDS
T07535
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hazt
Hyalella azteca
Pathway
hazt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108679945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108679945
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108679945
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108679945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_HEAT
DUF3819
HTH_CHD6-9
Motif
Other DBs
NCBI-GeneID:
108679945
NCBI-ProteinID:
XP_018024178
UniProt:
A0A8B7PDK1
LinkDB
All DBs
Position
Unknown
AA seq
2689 aa
AA seq
DB search
MNLDSFEAALSRTVNLISSLNTANLNSNLQQIVDITTHFGAASEQHIYHTYLHQFQWSLH
SVESRASSSIAKEKESLSLISSESSPGLLTTFLAKLSKLLPPAKFVAGLSFAILASPLVN
KAPAVRGRHLQPSALCSFVPFTCLLRSAIKLSPLLEACLLLRLLSDATNPDHRTELSSLV
LARVPAVLSPYSGPQAGGEDDLSDVWIECLHSLFIGLLEGCSLPITKASLPSTLPACPSS
STPSSLSSQLSLSFGDQLSSGNSASPLSFLLPSSVQQLPEVGSGVTSIVVPSDTLKGLLR
VVQAKYPPSEAPLVLTPLISSDISSFRGAVHQYPSAVLSKFVNTSSDGQLFTNMADLILS
ETLMEQGPSCNATIEDCRKNLAALSRPAFTASSIARFLVTATRAHYNAHVRHDQVGLHLP
SNPASLWSDKDKLGPNSNNPASRSENSSGNNSSNQTTTWNMDVVMQVIMELAPAPISAKE
VIMKLDVKNFHVIDRTSLGMFVTATRRLSGAYARADQYPVDCLYRKWQNADEQLSLINAM
LYCPDLFCFSDYPCTPVVVEMLKTVPELENKEVATWRSLNLIELLLSLENTQYSAVKALF
SLARQNCPDVLLLGLVQSNTLMGGIKREMIAQLMPVFLEPHPNTAAVLQTAWFTPNNKNA
VRQVMLQALSDWYMVQESDQTRLSRILDVAQDLKALSMLLNATAFPFVIDLACLAFRREF
LKLDKWLNDKVQEHGEAFLSALVKFVQQRCPQLTCAPGTADDAPSPLPKASQLPHETLVT
ITQCLASFVRVVMNPELSESILTISQNSSRLAASRQRTNIPGLLGFPSQDPLSALSPGLK
ALSLAGGGAGAAGTTAGAPATSMFPGALGSTSLNSAANLTGSAGLGSGGVGLAGAPPPGS
PSRGPLGVGAAVAAGGPSLVNNSHSSAVGSQLMPQHGPMDVSQIFELPAMVSKDVEDEAN
SFFQRIYNSPPNSTLSIKEVLELLKKFHESSVKKEREVYACMLRNLFEEYKFFPTYPHRE
LFTTAKLFGGIIDQGLVEFMALGVALRFVMEALQKPLNSKMYFFGILALDRFRSRLKEYP
RYCSHIMAIDHFNSFPPHLAEWVRYGTQVSEPPTRSSGPVLPPEFEALDSGGGVSGTMFH
QANSAVLPNNLLPPVAPSHPSMSSQHRLLTATGSGATPVKLNPPVVGNVGVPLTRPQSVV
AVGNKPSIATTNIETLLVASEEKTIPLRQPTEQQNDKIAFIFNNLSQMNLAQKSEELLDV
VSDDCWPWIAQYLVMKRASIEANFHNLYSNFLDALKLTSFTKLVIDETLRNIKVLFKLEK
NSANFSDKSLLKNLGHWLGLLTLAKNKPILHIDINFKSLLIEAYLKGTQEMQYVVPFVTK
VLESCGKSKVFKPPNPWTMSLMNILAEIHALQDMKLHLKFEIEVLCNKLEITVDSLKPKT
VLQEATSLSIREYQLGPQNPPNFGGHMSVTTPGAVDAMSEVAAVLARGKRAESTPLLPTM
PTFPNQSFLTGTISVSEGVGIPSGQGSSSAGATPTPQTVLSQVGMTCTQATPVPYHLHAA
GQLGSGSATPAPIVALMPASDKTFAYADINVTTLRGLEQHISLNNIPLLVELGNPAQLKT
LVREAIEIAVQELLSVVMERNIKIAMSTAETLVKKDFALDPDETHLRAAAHMMVRYLTAS
MVMITSKDYLASTVSKSIRQKLTPTFTRGNTVAQAAQIEQLANAITVENMAITCAFIQKT
SAEKAVMEMEKRLNQEYEVRKLARAENRHYCDTAALTYQAERMPEQMRLKVGRVTHQQMS
VYEDFGRHIPGFSPTSDQEVSTTLLPKALTVPYVLEESQAFLLLTERFGVDIEQTIQAFN
TVTPDSPVAVMLHNILTMLGHIRTNREFNSIPILLKKCMEHLLEGTRELPTDPELNPLVV
KFRDIHLLLLKTIADPRVYGVQWTTKTITKVWNEMRDDVKLNVDVVDWLLRSSLFHVPTF
DELLARSIEEQRNLLPLFFAMQIVQVYLVEDSQGVLSESDLQQTLDLMIRLCQTRHAPDS
LVALLEALRMKHDLASSAGDRNSAAVVVANQQNPVAVPLAAPTAVSAAMPTAAALAAVVA
ANQQPNTSVTNFTSSMHFQSGVNQARDFNDPAGLQDKTEVLLREWINLYHAPTAGPGSAT
AFTHFVKQMNLHGFLKTDELITRFFRNCVSFCRDVCIRSLSEQQQAQQSANGSQIPSTTI
AAVNISQYRNKCFQHVDPFVRLVALLIKHSGEANNPSTKINLLNKVLGLVCGIIFHDIES
SNTEFYQLPYHRILIMLFLELNAPEPVLETINVSVLMAFTQTLHLLRPSKCAGFAYAWLE
IVSHRVFIGRMLAITPQPKGWAMYSMLLNDLFKFLAPYLRNAQLAKPLTKLYKGTLRVLL
VLLHDFPEFLCEYHYDFCDAIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEIAV
SPKMHCDVFSYITPVELRSNLDSYLKNRTPVTFLTELRGYLQASPNSSLGTNQPGDDGMR
YNIQSLNALVVYVGMQAITQIQSKGQTPSMSTIAHSAHMDIFQNLAVDMDTEGRYLFLNA
IANQLRFPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIEL
IKNSTYKFWSHEFVKCAPEIEKLFESVARSCMVNKLGSSTVAGGQSVDA
NT seq
8070 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcatttgaagctgcgttgtctcgtactgtaaacttgatatccagcctc
aacaccgctaacctcaactccaatcttcagcaaatcgttgatatcacaacacattttgga
gcagcatctgaacaacacatttaccacacatacctacatcagttccagtggagtcttcac
agtgtagagtcacgagcttcctcatcaattgccaaagagaaagaaagcttgagcttgata
agcagtgagagcagccctggcctactgaccactttccttgctaagctcagcaagctccta
cctcctgctaaatttgttgctggtctcagctttgcaatccttgcatcaccactcgtaaac
aaagccccagcagttcgaggacgtcatttacagccttcagctctgtgctcgtttgtgcca
ttcacttgcttgctgcgctctgccatcaaactcagccctctattggaggcctgccttctg
ctgcgcctcttgtctgatgccacgaatcctgaccacaggactgagctgagctcgcttgtg
ttggcccgtgtaccggccgtcctttctccttattctggcccacaagctggcggcgaagac
gatctcagtgacgtttggatagagtgcctacacagtctcttcataggcctcttggaaggc
tgctccttgccaattaccaaagcttcattaccttcaaccctccctgcctgtccatcctca
tcgaccccgtcttctctgtcgtcacaattatctctctcatttggagatcaactgtcttct
gggaactctgcttccccgctatcgttcctactaccgtcatctgtgcagcagcttcctgaa
gttggcagtggcgtcaccagcattgttgtccccagcgataccctcaagggcctcttgcga
gtagtccaggccaaatacccaccttctgaagcgcctctggtgctcacacctctaatatct
tcagacattagctccttcagaggagccgtgcatcaatatccttcggctgttctcagtaaa
ttcgtgaatacgagctcagacggccagctattcacaaatatggctgacttgatcttgagc
gagacactgatggagcaggggccatcttgtaatgccaccattgaagattgccgcaagaat
ttagccgctctgtcgcgccccgccttcacggcctccagcatagcccgcttcctggtcact
gccacacgggcgcactacaatgcacacgtcaggcatgaccaggttggtcttcacttacca
tcaaatcctgcgtctctgtggagtgacaaggacaaactcggaccaaactcaaacaatcca
gcaagcaggagtgagaacagttcagggaacaactccagcaaccaaactaccacatggaac
atggacgtagtgatgcaggtcattatggagctcgctcctgctccaatatccgccaaagaa
gtcatcatgaagctcgacgtgaagaacttccatgtgatcgaccgtacgagtctcggcatg
ttcgtcaccgcaacgcgtcgtctgagtggagcctatgcgcgagctgaccaatatccagtg
gattgcttgtatcgcaagtggcagaacgcagatgagcagctcagtctcatcaatgccatg
ctttattgtcctgatctcttctgcttctctgattatccctgcacgcctgttgttgtcgag
atgctcaaaaccgtgcctgaactcgaaaacaaggaggtggcaacttggaggagcttgaat
cttatagaactgctgctgtcactggaaaacacgcaatactcggcagtaaaagcgctcttc
tctctagcgcgacaaaattgtcctgacgtattattacttggcttggttcagagcaacaca
ctaatgggtggcatcaaaagggaaatgatagcacaactcatgccagttttcctggagcct
caccccaacactgctgctgtgcttcagactgcctggttcacgcccaataacaagaatgct
gtaagacaggtgatgctgcaagctctgtctgactggtacatggtgcaggagagcgaccag
acgcgcctcagtcggatactcgacgtcgcacaagacctaaaagctttatcgatgctcctc
aacgctacggccttccccttcgttatagacctcgcttgcttggccttcagaagggagttc
ctcaagctggacaagtggcttaatgacaaagttcaggagcatggggaagctttcttgagc
gcactagttaagtttgtccagcaaagatgccctcagcttacttgtgctccgggcacggca
gatgatgctccaagccctctgcccaaagcctctcagctgccacacgagactctcgtcacc
atcactcagtgtctggcttcgtttgtgagagtggttatgaatcctgaattgtcggaaagc
attctgacgatcagccagaacagctcccgcctcgcggcatctcgccagcgcacaaatatc
ccggggctgctgggcttcccctctcaggaccccctgagcgccctctcgccaggactgaag
gcgctgtccctcgctggcggcggcgctggcgcagcaggtaccaccgcgggagctcctgcc
acctcaatgttcccaggggcgttgggttcgacttctttgaactccgctgcaaacctcaca
ggctcggcaggtttaggctctggtggagtgggtctcgctggcgctcctccacctggatcg
ccgtcacgaggtcctctgggtgttggagctgcggtggctgctggtggtccatcacttgtt
aacaattcccactcgagcgcagtcggatcacagctcatgcctcaacacggtcctatggat
gtgtcgcaaattttcgaactacccgcgatggtcagcaaagatgtcgaggatgaagccaac
agtttcttccagcgcatttacaacagcccacccaactcaactctctccatcaaagaggtc
ttggaactattgaagaagttccacgagtccagtgttaagaaagaacgtgaagtgtatgcc
tgcatgctgcgaaatctctttgaagagtacaaatttttccccacgtatcctcatcgtgaa
ctgttcaccacagctaaactcttcgggggtatcattgaccaaggcttagttgagttcatg
gctctaggagtggcgctgaggttcgtcatggaagctctacagaagccattaaacagcaag
atgtattttttcggcatcctcgctttggatcgctttcgttctcgcctcaaggagtatcca
cgatactgttcccacataatggccatcgaccacttcaacagcttcccaccgcacctcgct
gaatgggtgcgttatgggacgcaagtatcagagccacccacccgctccagcggtccagtc
ctcccgccagagtttgaagctctagacagcggtggcggagtttctggaactatgttccac
caagctaattctgccgtcttgcctaataacttgcttcctccagttgctccttctcatccc
tccatgtcctcccaacatcgtctcctcaccgcaacaggatcgggtgctacgccagtcaag
ttgaaccctcctgttgtgggtaacgtcggagtgccgctaacgcgtccccagtcggtcgtt
gcggttggtaacaaacccagcattgcaacaaccaacatcgaaactctgctcgtcgcctct
gaagaaaaaacgatccctctgaggcagccaactgagcaacagaatgataaaattgctttt
atcttcaacaacttgtcccagatgaacttggctcagaagagtgaagagctgcttgatgtt
gtgtctgatgattgctggccttggatcgctcaatatctggtcatgaaaagagcttctatc
gaagcaaactttcataatctttactccaactttttggatgctctcaagctcacttctttc
accaaacttgttattgacgaaacgttgcgcaatatcaaagttctgttcaagcttgagaaa
aattctgcaaatttttcggacaagtctttgcttaagaatcttggacattggcttggtttg
cttacactagcaaaaaataaacccattcttcacattgacataaacttcaaatccttactc
atcgaagcatatctgaaaggaacacaggaaatgcaatatgttgtgccatttgttacgaaa
gtattggaatcttgcggaaagagtaaagttttcaaaccgcccaacccatggaccatgtct
ttgatgaacattttagcggaaatccatgctttacaagacatgaaacttcatctcaagttt
gaaatcgaagtcctgtgcaacaaacttgagataaccgtcgacagtcttaaaccaaagacg
gtactgcaggaagctacgtcattaagcatccgggaatatcagctcggtccgcaaaatcct
ccgaatttcggagggcacatgtcagtgacaactccaggcgctgttgacgccatgagcgag
gtcgctgctgttctcgctcgcggcaaacgcgctgagagcactccacttctgcccaccatg
cctacattccctaaccagagtttcctcactggaaccatctccgtgagtgaaggcgtaggt
attccttctggacaaggttcctcatcggcaggcgccacgcccactccgcagacggtattg
tctcaggttgggatgacttgtacacaagctaccccagtgccctatcacctacacgcagcg
ggtcaattgggtagtggatcagctacccctgctcctattgtggccttaatgccggcgagt
gataagacctttgcatatgctgacataaatgtcacgactcttcggggtttggaacagcac
atttcactgaataatattcctcttcttgtcgagttagggaaccctgcgcagttgaaaact
cttgttcgcgaagccattgaaattgcggttcaggagctcctctcggttgtgatggaacgc
aatatcaagatagccatgtctacagctgagaccctagttaagaaagactttgctttggat
cctgatgagactcaccttagagctgccgctcacatgatggtacgatacctaaccgcttcg
atggtgatgatcacgagcaaagactatcttgcctctaccgtctcaaaaagcatccggcag
aaactcacgccgactttcactcgcggcaacacggtagcccaggctgcccaaatcgagcag
ttggctaatgccataacagtcgaaaatatggctattacttgtgcatttattcaaaaaact
tctgcggaaaaggccgtgatggagatggagaagcgactcaatcaagaatatgaagttcgt
aagctagctcgtgctgagaacaggcattattgtgatacagctgcactcacttatcaggct
gaaagaatgcctgaacagatgcgcttgaaagttggtcgagtgactcatcagcaaatgagc
gtatatgaagattttggccgtcacatccctgggttctcgcccacttctgaccaagaagtg
tcaaccactttgctgccgaaagcattgaccgtcccctacgttctggaagagtcacaagca
ttcctacttctgaccgagcgcttcggtgttgatattgaacaaaccatccaggcgttcaat
actgtcacgcctgatagccctgtggctgtcatgcttcataacatcctaactatgctcggc
catatccgcaccaacagagaattcaattccattccaattctccttaagaaatgcatggag
cacttgctagagggcaccagggaactgcccacggatccggagcttaatccgcttgttgtg
aaattccgggacattcatcttctgcttctcaaaacaattgccgacccacgagtttacgga
gtgcagtggaccaccaaaactatcacaaaagtatggaatgaaatgcgagacgacgtgaaa
ctcaatgttgatgtggtggactggctcctccgctcatcactcttccacgttccaactttt
gatgaacttcttgctagatcgattgaagaacagcgtaatctactgcctctatttttcgcc
atgcagatcgttcaagtctacttggttgaagacagccaaggagtgctgagcgagagcgac
ttacaacaaacacttgatctcatgatacgtctctgccaaacgcgtcacgctcctgactct
cttgtggcccttcttgaggctctcagaatgaagcacgatttggcaagctctgcaggcgac
agaaactcagctgccgtagtcgttgcaaatcagcagaatcctgttgctgttcctcttgcg
gctcccactgcagtttctgctgcaatgccaactgctgctgccctagccgctgttgttgca
gcaaatcagcaaccaaatacgagcgttacaaatttcacgtccagcatgcacttccagtca
ggcgttaaccaagcaagagacttcaatgaccccgcaggtcttcaggataaaactgaagtt
cttcttagagaatggatcaatctctaccacgcaccaacagctggaccaggttcagcaaca
gcatttactcacttcgtgaaacaaatgaacctacacggtttcctcaagacagatgagcta
attacacgcttcttccgtaactgtgtcagcttttgcagagatgtctgcattcgcagcttg
agtgaacagcaacaggcgcagcaatcagcgaacggttctcaaattcccagcacgaccatt
gctgctgtgaacatctcccagtaccgcaataaatgtttccaacacgtcgatcctttcgtg
cggcttgtagcgctactcatcaagcacagtggagaggctaataatccaagcaccaagatc
aatctactaaacaaagttttgggtcttgtatgcggcattattttccatgatattgaaagc
agcaacacggaattctaccagcttccttaccaccgcatcctcatcatgctgttcctcgag
ctcaacgctccagagcccgtgctcgagaccatcaatgtatcggtcttgatggctttcacc
caaactctgcacctcctccggccctcaaaatgcgctgggttcgcttacgcgtggctggag
atagtgagccaccgcgtgttcattggacgcatgctggccatcacgcctcagcccaaagga
tgggccatgtattccatgctcctcaacgatctcttcaagtttttggctccatatctgcgc
aatgcacaactcgctaagccgcttaccaagctctacaagggaactctgcgagtcctgctc
gtattacttcatgacttcccggagttcctgtgcgagtatcactacgacttctgtgatgcc
atcccgcctaattgcatccaaatgaggaacctaattctttccgcgttcccgagaaacatg
cgcctccctgaccccttcactcccaatctcaaggtggacatgcttcctgagatagccgtg
agccccaagatgcactgcgacgtgttcagctacatcacgcctgttgagctgcgctccaac
ttagactcgtatctcaagaatcgaacacccgttaccttcctaactgagcttagaggatat
ctacaagcctctccaaactcgtcattgggcaccaaccagccaggcgacgacggcatgcgc
tacaacatccagagcctgaatgctctcgtcgtctacgttggcatgcaagccattacacaa
atacaatcaaagggccagacgccatccatgtccaccattgcccactcagcgcatatggat
attttccaaaacttggctgtcgacatggacactgaaggccgttatttgttcttgaatgcc
atcgccaaccagctgcgattccccaacagccacacacactatttcagctgcactctcctc
tacctcttcgcagaagccaacacagaggccattcaagagcagataacgcgggtgttgctg
gagcgtttgatcgttaatcgaccacatccgtggggtcttctcatcactttcatcgaactc
atcaaaaattcgacttacaagttttggtctcacgagttcgtaaagtgtgcacccgagata
gagaaacttttcgagagcgtggcgcggtcttgcatggtcaacaagctcgggtcgtcaaca
gttgcaggaggacagagcgtcgacgcttaa
DBGET
integrated database retrieval system
