Hyalella azteca: 108683224
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Entry
108683224 CDS
T07535
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hazt
Hyalella azteca
Pathway
hazt03008
Ribosome biogenesis in eukaryotes
hazt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108683224
09123 Folding, sorting and degradation
03018 RNA degradation
108683224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hazt03021
]
108683224
03019 Messenger RNA biogenesis [BR:
hazt03019
]
108683224
03009 Ribosome biogenesis [BR:
hazt03009
]
108683224
03016 Transfer RNA biogenesis [BR:
hazt03016
]
108683224
Transcription machinery [BR:
hazt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108683224
Messenger RNA biogenesis [BR:
hazt03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108683224
Ribosome biogenesis [BR:
hazt03009
]
Eukaryotic type
Pre-60S particles
RNases
108683224
Transfer RNA biogenesis [BR:
hazt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108683224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
108683224
NCBI-ProteinID:
XP_047735982
UniProt:
A0A979FHA7
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIIECVEEKAFVDENGQSVPIDISKPNPNGVEFDNLYLDMNGII
HPCTHPEDKPAPKNEDEMMVAIFENIDRLMGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RASKETAERINEVAKIRQELIEKGFKVPPVKPKEDHFDSNCITPGTPFMDRLSKCLHYYV
HERLNNHPSWKNIKVILSDANCPGEGEHKIMDFIRRQRASPDHDPNTQHVLCGADADLIM
LGLATHEPYFTIIREEFKPNKDKPCEICGIGGHELKDCEGTPDGKLVEAEKVYAEVNFIF
VRLFVLREYLEKELLMNNLPFTYDFERAIDDWVFMCFFVGSLFKHMPLDIGSRANDITIN
LMRDVQGWLTDSGRVNMKRVQIIMTNLGEVEDQIFRDRQQREVAFKRRNKQRAAMSLQXA
GPYGRGGWRGGGGGGGGVKRSSDAMDSDSDEEPNDEVRLYEEGFKDRYYESKFEVTADDL
AFRELVANEYAIGLCWVLRYYYQGCASWGWYFPYHYAPFASDFKNCGNAKVKFEMGTPFN
PLEQLMGVFPAASRSHVPAPWGELMYRVDSTIIDFYPEDFKIDLNGKKYAWQGVALLPFV
DETRLKRALQAVYDQLTPEERRRNVRGCDRLYVASAHPSYKQLRDMYRMGMDMQTEIPIA
GDEFDRITGKILLSKDVVGHGEGLESPVDGQPDLNNNHVVCVRYKDPTFAEDFVFPAKLL
PGIKPPPRVLKPGDQAVDLTRGGGRGRGGFGDRGRGGFSRGGGGYGGADAPGSYRPVTGF
MTNLPTRASLSDAGHRFVHSTMGSAARFNSAPPPDSYQTVLSAEHKAVFSAEHIIPVFSA
EHITAVLSAEHTIPVFSAEHITAVLSAEHIISVLSAEHKAVFSA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattcttccggtggttatcaaggaagtacccatcagtgatcattgaa
tgtgtggaagagaaggcctttgttgatgaaaatgggcagtctgttcctattgacatctcg
aagcccaatcctaatggcgtggagtttgacaacctctacctggacatgaatggcatcatc
catccctgcactcaccctgaggataaacctgctcccaagaatgaagatgagatgatggtc
gccatatttgagaacatagaccggctgatgggcatagtgcggccgaggaagctgctgtac
atggctatagacggcgtggcgcctcgggctaaaatgaaccagcagcgctcacggcgcttc
agggccagcaaggagaccgccgagaggatcaatgaagtcgccaagattagacaagaactc
attgaaaaagggtttaaagtacctcctgtgaagccgaaagaagatcacttcgactctaac
tgcatcacgccgggcacacccttcatggaccgcctcagcaagtgcctgcattactatgta
cacgagcgtctcaacaaccatcccagctggaaaaacatcaaggtgatcttgtcagacgcg
aactgtcccggtgaaggcgagcacaagatcatggacttcatcagacgacagcgcgcgtct
cctgaccacgaccccaacacacaacacgtgctgtgtggtgctgacgctgacctcatcatg
ctggggcttgccacccacgagccttacttcaccatcatcagggaggagttcaaacctaac
aaggacaaaccctgcgagatctgcggcataggaggtcacgaactgaaggactgcgaaggc
acccctgacggcaagctggtggaggcagagaaggtgtacgcggaggtgaacttcatcttc
gtgcggttgtttgtgctgcgcgagtacctggagaaggagctgctaatgaacaacctgccc
ttcacttatgacttcgagcgagccatcgatgactgggtcttcatgtgcttcttcgtcggt
tcgttatttaagcacatgcccctagatataggtagcagggctaatgatatcaccattaat
cttatgcgtgacgtgcagggctggctgacggacagcgggcgcgtgaacatgaagcgcgtg
cagatcatcatgacgaacctgggcgaggtggaggaccagatcttcagggaccggcagcag
cgcgaggttgccttcaagaggcgcaacaagcagcgcgctgctatgtccctgcagnntgct
ggtccatacggtcggggcgggtggcggggcggcggtggtggtggcggcggcgtgaagcgc
tcatcagacgcgatggacagcgactctgacgaagaacctaacgacgaggtgcgcctctac
gaggagggcttcaaggaccgctactacgagagcaagtttgaggtcacggccgacgacctc
gccttcagggagctcgtcgctaatgaatacgccatagggctctgctgggtcctcaggtac
tactaccaaggctgtgcatcctggggctggtatttcccctaccactacgcgccttttgct
tcagacttcaagaactgcggcaacgctaaagttaagttcgaaatgggcacgcccttcaac
cccctggagcaactgatgggggtgttccccgctgccagcagatcccacgtccccgccccc
tggggggagctcatgtacagagtggactccaccatcatagacttctaccccgaggacttc
aagatcgacctcaacggcaagaagtatgcctggcaaggagtcgccctcttgcccttcgtt
gatgagaccagattgaagcgtgccctgcaggccgtctacgaccaattgacgcccgaggag
cgacgtcgcaacgtgcgaggctgcgaccgcctctacgtggccagcgcacacccctcctac
aagcagctgcgcgatatgtacaggatgggcatggacatgcagaccgagatcccgatagca
ggcgatgagttcgaccgaataactggcaagatcttgctgtccaaagacgtcgtgggtcat
ggagagggtctggagagccctgtggacggccagccagacctgaacaacaaccacgtggtc
tgcgtgcgctacaaagaccccaccttcgctgaggacttcgtattccctgccaaactctta
cccgggatcaagcccccgcctcgggtcctcaagcctggggaccaggctgtggatttgacc
cgtgggggagggagaggcaggggagggtttggggatagagggcgtggagggttcagcagg
ggaggaggaggctatgggggggcggatgcaccaggatcctatcgtcccgtgacaggattt
atgacgaacctccccacccgcgcgtctctcagtgacgcggggcacagattcgtacactct
acgatgggaagcgctgctcgcttcaactcagcgccgcccccagactcttatcagactgtt
ctctccgctgaacacaaagctgttttctccgctgaacacatcatacctgttttctccgct
gaacacataacagctgttctctccgctgaacacaccatacctgttttctccgctgaacac
ataacagctgttctctccgctgaacacatcataagtgttctctccgctgagcacaaagct
gttttctccgcttaa
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