Halorubrum sp. 2020YC2: KI388_00535
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Entry
KI388_00535 CDS
T08040
Name
(GenBank) topoisomerase DNA-binding C4 zinc finger domain-containing protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hazz
Halorubrum sp. 2020YC2
Brite
KEGG Orthology (KO) [BR:
hazz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hazz03032
]
KI388_00535
03400 DNA repair and recombination proteins [BR:
hazz03400
]
KI388_00535
Enzymes [BR:
hazz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KI388_00535
DNA replication proteins [BR:
hazz03032
]
Prokaryotic type
DNA Topoisomerases
KI388_00535
DNA repair and recombination proteins [BR:
hazz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KI388_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
HHH
DNA_pol_lambd_f
Cdd1
DUF4332
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QWC19507
UniProt:
A0A8E8EX43
LinkDB
All DBs
Position
104619..107216
Genome browser
AA seq
865 aa
AA seq
DB search
MSRGPELIITEKDNAARRIADILSGESATAERTNDVNVYEWGGKRCIGLSGHVVGVDFPA
EYNDWRDVEPVELIDAPVTKTPTQEGIVAALRKLARNASRVVIATDYDREGELIGKEAYE
LVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGAALTRFL
SLSARQMGDDFISVGRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYF
YLNDEGNERERVWDETVAETLTEALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS
LGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPDDLEPEELIEELSAASTFGKDAASLLDE
DRDVEPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELIVRRFLATCADPATWERLR
VVALADGGATPIAESADGLAALRNPDEAARPADLVADGGLRLKANGKRLLEAGYHDVYPY
RSSDERIVPDVEAGETLSLSDRTTEGKATQPPRRYGQSRLIEEMEKRQLGTKATRHRTIE
KLYDRNYVESDPPRPTRLAEAVVEAAEEFADRIVSEEMTAQLEEDMAAIAAGERAYDEVT
AASRELLSSVFDDLTESREAVGDHLQNSLKADKTLGPCPECGADLLVRKSRQGSYFVGCD
GYPDCEYTLPLPSTGKPLILDETCEEHDLRHVKMLAGRKTFVHGCPQCKADEADEQEDEV
IGVCPECGEGHGGELAIKRLRSGSRLVGCTRYPDCDYSLPLPRRGEVEVTDETCEEHGLP
HLRVHSGDDPWELGCPICNYREFTARQEGSELQAVEGIGEKTAAKLRDAGVDGVDELKSA
DPDDLASDVDGVGAATVRDWQAKAD
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcggccccgagctgataatcacggagaaagacaacgcggcgcggcgcatcgcc
gacatcctgagcggcgagtccgcgaccgcggagcggaccaacgacgtcaacgtctacgag
tggggcggcaagcggtgtatcggcctctccggccacgtcgtcggcgtcgacttccccgcc
gagtacaacgactggcgcgacgtcgagccggtcgagctcatcgacgcgcccgtcaccaag
acgccgacgcaggaggggatcgtcgccgcgctccgcaagctcgcgcgcaacgcctcccgg
gtcgtcatcgcgaccgactacgaccgcgagggcgagctgatcggcaaggaggcgtacgag
ctggtccgcgaggtgaacgaggacgtccccgtcgaccgcgtccgcttctcctcgatcacg
gagaacgaggtgcaggaggcgttcgcgaaccccgacgacctcgacttcgaactcgcggcc
gccggcgaggcccgtcagaccatcgacctcacgtggggcgccgccctgacgcggttcctc
tccctttcggcccgccagatgggcgacgacttcatctccgtcggccgggttcaggggccg
acgctcaagctcatcgtcgaccgcgagcgcgagattcaggcgttcgaccccgagtcctac
tgggagctgaccggcgagcttgcgaagtccggcggcgacccgttcgaggcgcgctacttc
tacctgaacgacgagggcaacgagcgcgagcgcgtctgggacgagaccgtcgcggagacg
ctcaccgaggcgctcgacgcggccgacggggcgaccgtcgacgacgtcacccgtcggacc
cagaccgacgacccgccgacgccgttcaacaccaccgcgttcatccgcgccgcggggtcg
ctcggctactccgcccagcgcgcgatgtcgctcgcggaggacctctacaccgccggctac
gtcacgtatccgcggaccgacaacacggtgtatcccgacgacttggagcccgaggagctg
atcgaggagctctcggcggcctcgacgttcgggaaagacgccgcgagcctgctggacgag
gaccgcgacgtcgagccgaccgagggcgacgaggagacgaccgaccacccgccgatccac
cccaccggcgagctcccctcggcctccgacctctcggacgacgagtgggaggtgtacgag
ctgatcgtccgccgcttcctcgccacctgcgccgacccggccacctgggagcgcctccgc
gtggtcgccttggcggacggcggggcgactccgatagccgagagcgccgacggactcgcc
gccctccggaacccggacgaggcggcgaggccggccgacctcgtcgcggacggcggcctg
cggctgaaggccaacgggaagcgcctgctggaggccggctaccacgacgtctacccgtac
cgctccagcgacgagcggatcgtcccggacgtcgaggccggcgagacgctgtcgctgtcg
gaccgcaccaccgaggggaaagcgacccagccgccccgccgctacgggcagtcgcggctc
atcgaggagatggagaagcggcagctgggcacgaaggcgacccgccaccggacgatagag
aagctgtacgaccgcaactacgtcgagagcgacccgccccgcccgacgcggctggcggag
gcggtcgtcgaggccgccgaggagttcgccgaccggatcgtgagcgaggagatgaccgcc
cagctcgaagaagacatggcggccatcgcggccggtgagagggcgtacgacgaggtgacg
gcggcctcccgcgagctgctttcgagcgtgttcgacgacctcaccgagtcgcgcgaggcc
gtcggcgaccacctccagaactcgctgaaggcggacaagacgctcggcccgtgcccggag
tgcggcgcggacctcctcgtccggaagtcgcggcaggggtcgtacttcgtcggctgcgac
ggctatcccgactgcgagtacaccctcccgcttccctcgaccgggaagccgctcatcctc
gacgagacctgcgaggagcacgacctccgccacgtgaagatgctcgccgggcggaagacg
ttcgtccacggctgcccgcagtgtaaggccgacgaggccgacgagcaggaggacgaggtg
atcggcgtctgtcccgaatgtggagagggacacgggggggagttggcgatcaagcgactc
cgctccggctcgcggctcgtcggctgtacgcgctaccccgactgcgactactcgctgccg
ctcccccggcgcggcgaggtcgaggtcaccgacgagacctgcgaggagcacggcctcccg
cacctccgcgtccactccggggacgacccgtgggagctcggctgtccgatctgtaactat
cgcgagttcacggcccgacaggaggggtcggagcttcaggcggtcgaggggataggcgag
aagaccgccgcgaagctgagagacgccggcgtcgacggcgtcgacgagctcaaatcggcc
gacccggacgacctcgcgtccgacgttgacggcgtgggcgcggccaccgtgcgcgactgg
caggccaaggcggactga
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