Halorubrum sp. 2020YC2: KI388_06810 Help Entry KI388_06810       CDS       T08040                                  Name (GenBank) CDC48 family AAA ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism hazz  Halorubrum sp. 2020YC2 Pathway hazz04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:hazz00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     KI388_06810  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hazz03019]     KI388_06810    03009 Ribosome biogenesis [BR:hazz03009]     KI388_06810    04131 Membrane trafficking [BR:hazz04131]     KI388_06810   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:hazz04147]     KI388_06810 Messenger RNA biogenesis [BR:hazz03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      KI388_06810 Ribosome biogenesis [BR:hazz03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     KI388_06810 Membrane trafficking [BR:hazz04131]  SNARE   SNARE associated proteins    Others     KI388_06810  Autophagy   Aggrephagy    Other aggrephagy associated proteins     KI388_06810 Exosome [BR:hazz04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    KI388_06810 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA AAA_lid_3 CDC48_N CDC48_2 AAA_16 RuvB_N AAA_5 TIP49 AAA_22 AAA_2 AAA_33 AAA_14 nSTAND3 NPHP3_N RNA_helicase IstB_IS21 AAA_28 AAA_7 Mg_chelatase ABC_tran Sigma54_activat AAA_25 ATPase AAA_18 AAA_17 AAA_3 DUF815 AAA_24 Parvo_NS1 NB-ARC AAA_11 TsaE AAA_30 SLFN-g3_helicase ResIII Zeta_toxin AAA_lid_PRS2_C Vps4_C NACHT PhoH IPT Zot Motif Other DBs NCBI-ProteinID:  QWC20637 UniProt:  A0A8E8KBJ9 LinkDB All DBs Position 1381211..1383433 Genome browser AA seq 740 aa AA seqDB search MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN TDTVRVDGFTRQNADVGIGERVTIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPDGVCLITEDTEVELREEPISGFE KTGGGITYEDIGGLQSEIQRVREMVELPMKHPQIFSKLGIEPPQGVLLHGPPGTGKTLLA KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED VTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPALRRPGRFDREIEIGVPDEV GRKEILQIHTRGMPLSDDVSLDHLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEE EVPPSLIDRMIVKRDDFSGALNEVEPSAMREVLVELPKISWDDVGGLSDAQQQVQESVEW PLTSPEKFDRMGVNAPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES EKAIRQTFRKARQVSPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEDMGDV MVIGATNRPDMIDPALLRSGRFDRLVMIGQPDQEGREQILDIHTQNTPLAPDVSLREVAE ITDGYVGSDLEGIAREAAIEALRDDDDAEEVEMKHFRRAMESVRPTINDDILAYYEDVRE QFKGGGGESLRDTGGRIGFQ NT seq 2223 nt NT seq  +upstreamnt  +downstreamnt atgaacgaagtccaactcgaagtggcgaaggcgtacccgaacgactcggggcgcggcatc gcccgactcgaccccgacaccctgttgcacctgaagctctcgcccggcgacatcatcgag atagagggcgcggagaccaccgccgcgaaggtctggcgcgcggaccgccaggactggaac accgacaccgtgcgcgtcgacgggttcacccgccagaacgcggacgttggcatcggcgag cgcgtcaccatccggaaggcggaggccgagaaggccgacaagctcgtcttggccccgccc gaggaggcgtcggtccagttcggctccgacgccgccggcatggtgaaacgccagatcctc aagcgcccggtcgtcgagcgcgacatcgtccccgtgatgtcgtcgacgaaccacccgttc atgcggtcgcccgggcaggcgatcccgctgatcgcggtcgagacggagccggacggcgtc tgtctcatcaccgaggacaccgaggtcgaactgcgtgaggaaccgatctccgggttcgag aagactggcggcgggatcacctacgaggacatcggcggcctccagtcggagatccagcgc gtccgcgagatggtcgaactgccgatgaaacacccgcagatcttctcgaagctcggcatc gagccgccgcagggcgtcctgctccacggcccgccgggcaccgggaagacgctgctcgcg aaggcggtcgccaacgagacgtcggcgtcgttcttctcgatcgccggccccgagatcatc tcgaagtactacggcgagtccgaacagcagctcagggagatcttcgaggacgcgaaagag gagtcgccctcgatcatcttcatcgacgagctcgactcgatcgcgcccaagcgcgaggac gtcaccggcgaggtcgagcgacgcgtcgtcgcccagctgctgacgatgatggacgggtta gagacgcgcggacaggtgatcgtcatcggcgcgacgaaccgcgtcgacagcgtcgacccc gcgctccgccggccgggccggttcgaccgcgagatcgagatcggcgtccccgacgaggtg ggccgcaaggagatcctccagatccacacccgcgggatgccgctctcggacgacgtgagc ttggaccacctcgcggacgagacgcacggcttcgtcggcgccgacatcgagagcctcacg aaggaggccgcgatgaaggcgctccggcggtacctcccggagatcgacttagacgaggag gaggtgccgccgagcctcatcgaccggatgatcgtcaagcgcgacgacttctcgggcgcc ctcaacgaggtcgagccctccgcgatgcgcgaggtgctcgtcgagctgccgaagatatcg tgggacgacgtgggcgggctcagcgacgcccaacagcaggttcaggagtcggttgagtgg ccgctcacctcgccggagaagttcgaccggatgggcgtcaacgccccgaagggggtgctg ttgtacggaccgcccggaaccgggaagacgctgatggcgaaggcggtcgccaacgagacg aacgcgaacttcatctcggtccgggggccgcagctgctctcgaagtgggtcggggagtcg gagaaggcgatccggcagaccttccggaaggcccggcaggtgagcccgacgatcatcttc ttcgacgaactggacagcctcgcgccctcgcgcgggcaggagatggggaacaacgtgtcc gagcgcgtcgtcaaccagctcctgacggagcttgacggccttgaagacatgggcgacgtg atggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcgctgctgcgctcgggg cggttcgaccgcctcgtgatgatcggccagccagatcaggagggccgcgagcagatcctc gacatccacacgcagaacacgccgctcgcgcccgacgtgagcctccgcgaggtcgcggag ataaccgacggctacgtgggctccgacttagaggggatcgcccgcgaggccgccatcgag gccctgcgcgacgacgacgacgccgaggaggtcgagatgaagcacttccggcgcgcgatg gagtcggtgcggccgacgataaacgacgacatcctcgcgtactacgaggacgtcagagag cagttcaagggcggcggcggcgagtcgctgcgcgacaccggcggccggatcgggttccag tag

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