Halorubrum sp. 2020YC2: KI388_11700 Help Entry KI388_11700       CDS       T08040                                  Name (GenBank) CDC48 family AAA ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism hazz  Halorubrum sp. 2020YC2 Pathway hazz04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:hazz00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     KI388_11700  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hazz03019]     KI388_11700    03009 Ribosome biogenesis [BR:hazz03009]     KI388_11700    04131 Membrane trafficking [BR:hazz04131]     KI388_11700   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:hazz04147]     KI388_11700 Messenger RNA biogenesis [BR:hazz03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      KI388_11700 Ribosome biogenesis [BR:hazz03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     KI388_11700 Membrane trafficking [BR:hazz04131]  SNARE   SNARE associated proteins    Others     KI388_11700  Autophagy   Aggrephagy    Other aggrephagy associated proteins     KI388_11700 Exosome [BR:hazz04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    KI388_11700 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 TIP49 AAA_5 AAA_33 AAA_14 AAA_22 NPHP3_N nSTAND3 AAA_28 AAA_7 RNA_helicase Mg_chelatase AAA_lid_PRS2_C AAA_3 NB-ARC IstB_IS21 ABC_tran DUF815 Sigma54_activat AAA_18 SLFN-g3_helicase Parvo_NS1 AAA_17 TsaE Zeta_toxin AAA_30 Vps4_C AAA_11 AAA_24 PhoH AAA_19 bpMoxR ATPase_2 Bac_DnaA Molydop_binding Zot Motif Other DBs NCBI-ProteinID:  QWC18782 UniProt:  A0A8E8EW25 LinkDB All DBs Position 2332764..2335031 Genome browser AA seq 755 aa AA seqDB search MKLTVKPLKQKDAGRRLAAIDRVAADELGLSGGDIVRVEGADGAAVARVWPGYPEDDGTG VIRIDGRLRQEADVGIDDRVTVEDVDVSRADAVTIAFPSQLRVRGQIAPFIRDKLSGQPV TEGQTIRTSLGFGLMGGQSQAVPMKIAETSPGGTVVITDETEISISEISAEEIADRDDAA GGTGEGPDVTYEDIGGLDDELEQVREMIELPMRHPELFKRLGIDPPKGVLLHGPPGTGKT LIAKAVANEIDANFHTISGPEIMSKYYGESEEQLREVFEEASEESPSIIFMDELDSIAPK REEAGGDVERRVVAQLLSLMDGLEERGEVVVIGATNRVDAIDQALRRGGRFDREIEVGVP DRDGRKEILQVHTRNMPLTDGIDLDEYAENTHGFVGADLESLAKESAMHALRRIRPEIDL ESDEIDADVLNSIQVTEADFKEAIKGIEPSALREVFVEVPDTTWEDVGGLEDTKERLRET IQWPLEYPEVFEELDMQAAKGVLMYGPPGTGKTLLAKAVANESESNFISIKGPELLNKYV GESEKGVREVFSKARENAPTIVFFDEIDSIATERGKNSGDSGVGERVVSQLLTELDGLES LEDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDETARRRIFEVHTRDKPLADDVDLD ALARKTDGYVGADIEAVAREASMNASREFIGSVTREEVGESVGNVRVTMEHFEDALSEVN PSVTPETRERYEEIEKQFRRSEVDRTEAEPGAAFQ NT seq 2268 nt NT seq  +upstreamnt  +downstreamnt atgaagctcaccgtcaagccgctgaaacagaaggacgccggccgccgcctcgcggcgatc gaccgcgtcgcggccgacgagctgggcctctccggcggggacatcgtccgcgtcgagggc gccgacggggccgcggtcgcccgcgtctggcccggctaccccgaggacgacggcaccggc gtgatccgcatcgacggccgcctccgacaggaggccgacgtggggatcgacgaccgcgtg accgtcgaggacgtcgacgtctcgcgggcggacgcggtgacgatcgccttcccgagccag ctgcgggtgcggggccagatcgccccgttcatccgcgacaagctctccggacagccggtg accgagggacagacgatccggacctccctcggcttcgggctgatgggcggccagtcgcag gcggtgccgatgaagatcgcggagacgagccccggcggcacggtcgtcatcaccgacgag acggagatcagcatctccgagatctccgccgaggagatcgccgaccgcgacgacgccgcg ggcgggaccggcgagggccccgacgtcacctacgaggacatcggcgggctcgacgacgag ctagagcaggtccgcgagatgatcgagctgccgatgcggcacccggagctgttcaagcgc ctcggtatcgaccccccgaagggcgtcctgctccacgggccgccgggcaccgggaagacg ctgatcgcgaaggcggtcgccaacgagatcgacgccaacttccacacgatctccggcccg gagatcatgtcgaagtactacggcgagagcgaagagcagctccgcgaggtgttcgaggag gcgtccgaggagtcgccctcgatcatcttcatggacgagctcgactccatcgcgcccaag cgcgaggaggccggcggcgacgtagagcgccgcgtcgtggcccaactgctctcgctgatg gacgggctcgaagagcgcggcgaggtcgtcgtcatcggggcgacgaaccgcgtcgacgcc atcgaccaggcgctccgacggggcggccgcttcgaccgcgagatcgaggtcggcgtcccc gaccgcgacggccgcaaggagatccttcaggtccacacgcggaacatgccgctgaccgac gggatcgacttagacgagtacgccgagaacacccacggcttcgtcggggccgacttagag tcgctcgcgaaggagtccgcgatgcacgcgctgcgccggatccgcccggagatcgacctc gaaagcgacgagatcgacgccgacgtgctgaacagcattcaggtgaccgaggcggacttc aaggaggcgataaagggaatcgagccctccgcgttacgggaggtgttcgtggaggtcccc gacaccacctgggaggacgtgggcggcctcgaggacaccaaagagcggctccgcgagacg atccagtggcccctggagtaccccgaggtgttcgaggagctggacatgcaggccgcgaag ggcgtcctgatgtacggcccgccgggcacggggaagaccctgctcgcgaaggccgtcgcc aacgagagcgagtcgaacttcatctcgatcaaggggccggagctgctgaacaagtacgtg ggcgagtccgagaagggcgtccgcgaggtgttcagcaaggcccgggagaacgcgccgacg atcgtgttcttcgacgagatcgactcgatcgccaccgagcgcgggaagaactccggcgac tccggcgtcggtgaacgcgtcgtctcccagctcctgacggagcttgacggcctcgaatcg ctggaggacgtggttgtcatcgcgacgacgaaccgcccggacctcatcgactcggcgctg ctgcgccccggacgcttagaccggcacgtccacgtgcccgtccccgacgagacggcgcgc cgccggatcttcgaggtccacacgcgggacaagccgctggcggacgacgtcgacctcgac gcgctggcgcgcaagaccgacgggtacgtcggcgccgacatcgaagcggtcgcccgcgag gcgtcgatgaacgcctcccgagagttcatcggcagcgtcacgcgcgaggaggtgggcgag tccgtcggcaacgtccgcgtgacgatggagcacttcgaggacgcgctgagcgaggtcaac cccagcgtcaccccggagacgcgcgagcgctacgaggagatagaaaagcagttcaggcgg tccgaggtggaccgcaccgaggccgaaccgggcgccgcgttccagtag

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