Hirschia baltica: Hbal_0223
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Entry
Hbal_0223 CDS
T00945
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hba
Hirschia baltica
Pathway
hba02020
Two-component system
hba02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hba00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hbal_0223
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hbal_0223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hba03021
]
Hbal_0223
Transcription machinery [BR:
hba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hbal_0223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
ACT57925
UniProt:
C6XLL9
LinkDB
All DBs
Position
244616..246118
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AA seq
500 aa
AA seq
DB search
MAISQRLQMRQGQSLVMTPQLQQAIKLLQLSNIELAEYVEAEIEKNPLIQKGDGSEDNSP
KTEAVESNSATELDLGAGEAQNNLDAPREDAFEADSPSEQVQPDGASGPSASVDWSGTGK
GGSSSGGGDDYDFESNLCEEVTLRSHLEDQLKMSGLQGVDQFVAQRLIDELDEVGYMRTE
PAEIAETLGTDIAHIERVLGVCQGFEPTGVFAKSLEDCLAIQLKEKNRFDPAMAAMLDNL
QMIAKGNLKGLAEICGVDREDLSDMLTELRDLSPRPAAGYAGDAAPTVVPDVFVREMSNG
MFAVELNSDTLPKVLLDRTYYAEVNNVTRTEDEKEFVSECHANANWLIKSLDQRARTILK
VSQEIIRQQDGFFVRGVQALRPLNLKAVADAVDMHESTISRVTSNKFMSTPRGVFELKYF
FSASIPAIRGGEAHSAEAVRYRIKAMIDDEASDAVLSDDQIVERLRAHGIDIARRTVAKY
RESLRIPSSVERRRILARSA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggctatttctcaacgtttacaaatgcgtcagggccaatcactggtcatgacaccacaa
ttgcagcaagctattaaattgctgcaattatccaatatcgaactcgccgaatatgtcgaa
gccgagatcgaaaaaaatcctctgattcaaaaaggggatggatctgaagataattctcct
aaaacagaagctgttgagagcaattctgcaactgagctagatcttggtgcaggtgaagca
caaaataatcttgatgcaccccgcgaagacgcgtttgaagcagattccccgtctgaacaa
gttcaacctgacggcgcgagtggtccatctgcatctgtcgactggtccggtactggtaaa
ggtggaagcagttctggcggcggtgatgattatgattttgagagcaatctttgtgaagaa
gtcacactgcgttcgcatttagaagatcaattgaaaatgtctggtcttcaaggcgtagat
caattcgttgcacaacgattaatcgatgaactcgatgaagttgggtatatgcggacagag
cctgcagaaattgcggaaacgcttggaacagacatagcgcatattgagcgggttcttggt
gtttgtcaggggtttgagccaacaggtgtttttgcgaaaagcttagaagattgtttggct
attcagcttaaagagaaaaaccgatttgatccggccatggcggctatgctggataatttg
caaatgattgccaagggaaacctcaaaggtttggctgaaatttgcggcgtagatcgtgaa
gacctttcggatatgctaactgaattgcgggatttatcgccgcgtccggcggctggttat
gcgggagatgcagcgccaacagtggtgccagatgtgtttgtgcgtgagatgagcaatgga
atgtttgccgttgaattaaactctgacactttgccgaaagtgcttctggatcgcacttat
tatgctgaagtgaataatgtcacgcgaactgaagatgaaaaagaattcgtgtctgaatgt
catgcaaatgcaaactggttgattaaaagtttggatcaacgtgctcgcactattttgaaa
gtgtctcaggaaattattcgtcagcaagacggattttttgttcgcggtgttcaggcgttg
agacctttaaaccttaaagcagttgcagatgctgttgatatgcatgaatcaacgatttcg
cgtgtgacttctaataaattcatgtcgacgccgcgcggtgtttttgagttgaaatatttc
ttctcagcctcaattccagcgatccgcggcggtgaagcgcattcagcagaagctgtccga
tatcggattaaagcgatgattgatgatgaagcttcagacgctgtattgtcagatgatcag
attgtggaacgtcttcgtgcccacggaatcgacattgcaagacgaacagttgctaaatat
cgggaatctttgcgaattccctcatcagttgagcgcagaaggatcttggcccgctcggca
taa
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