Hirschia baltica: Hbal_1989
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Entry
Hbal_1989 CDS
T00945
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hba
Hirschia baltica
Pathway
hba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hbal_1989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hba03019
]
Hbal_1989
03016 Transfer RNA biogenesis [BR:
hba03016
]
Hbal_1989
Enzymes [BR:
hba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hbal_1989
Messenger RNA biogenesis [BR:
hba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hbal_1989
Transfer RNA biogenesis [BR:
hba03016
]
Prokaryotic type
tRNA degradation factors
Hbal_1989
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_MCM4
WHD_BLACT
Motif
Other DBs
NCBI-ProteinID:
ACT59673
UniProt:
C6XL74
LinkDB
All DBs
Position
2142329..2144605
Genome browser
AA seq
758 aa
AA seq
DB search
MSNITEKAVLEFLERNPDKSNKREIARGLGVQGSDRVALRQILKKLETEGTIARTGKRQF
SSVDAPPPTSIIKFEKLDEHGDLVGRCVGRDGLYGPEITCVATGGRKKGESLGIGDKALC
KVGKANDSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVEKILSKDA
ETGDIVRISLKKSKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEFPVEIIAEAEN
ATAQKTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIVYVAIADVAAYVQH
GTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAVEMRFSANGNKIGH
RFIRGTMRSAAKLSYEQAQAAIDGKPDDKAGPLLETVLKPLWAAYECVGKARTRRQPLEL
DLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESLEKANSPLIYRVHDEP
SDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHLVSEMVLRSQSQARYA
PENFGHFGLNLAKYAHFTSPIRRYSDLIVHRALIRALSLGPDGLSDVESKRLEEIAEHLT
TTERRSMAAERDATDRYLVAFMSEKVGAEFQGRIAGVTKAGMFVKLDDSGADGFIPAARL
SDEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEATPLTGGLLFEMLSEPREAREDLVK
PKRERRGRNHPPRGNKGSKKRPSNRSARSNGSRSGKKK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatataactgaaaaagccgttcttgaatttctagagcgcaatcccgataaatcc
aacaaacgcgaaattgcacgaggtcttggtgttcaaggctccgaccgtgtcgcgctgcgt
cagattctaaaaaaacttgaaacagaaggcacaatcgctcgcacaggaaaacgtcagttt
tctagcgttgatgccccgcctcccacatctatcattaaatttgaaaaactagacgaacat
ggcgatctagttggccgctgcgtcggccgtgatggcttgtacggcccagagatcacatgt
gttgccactggcggacgcaaaaaaggcgaatcccttggaattggcgataaagctctctgt
aaagttggcaaagctaatgacagtctctggtatgccaaagttatcaagaaaatcgaaaac
acgacgacttcaacagtcatcggtttgtttgaagccaataaacatggcggacgcgtcaaa
ccgaccagtcgcaaagacaaaaatgagtatctggttgaaaagatcctctccaaagatgca
gaaactggcgacatcgttcgtatcagcctaaaaaaatctaagccttacggcccgcaaatg
gctgaagtggttgagattgttgggcgtatggaaaacccaaaatcagcatccctcatcgct
ctgcacacacatgatgtgcccgatgaattccccgttgaaatcattgcagaagcggaaaac
gcgacagctcaaaaaacggcgcgtgaagatcttacagatattccgctcatcacaatcgac
ccagcagatgcacgcgatcatgatgatgctgtttttgcacgtccagatgaagatgaaggc
aataatggcggctggatcgtttatgtcgctattgcagatgttgctgcctatgtacaacac
ggtacagcattggatgatgaagcctataaacgcggaaactcgacctatttcccagaccgt
gttgcgccaatgcttccagaagctctttcagcagaacaatgttctctgaaggaaaacgaa
ttgcgcgaaactttcgcggttgaaatgcgtttttctgcaaatggtaacaaaattggccac
cgctttattcgcggtacaatgcgttcagcagccaaactttcctatgaacaagctcaagcc
gctattgatggcaaacctgacgataaggccggccctcttcttgaaaccgtccttaagcct
ttatgggcagcttatgaatgtgtcggcaaagcccgcacacgtcgccaaccattggagcta
gacctacccgagcgccgcgtcacacttgataaagacggcacagtgcttggcgtattcacc
aaagaccgctttgacgctcataaactcatcgaagagtttatgatccaagccaatgtgtgt
gcggcggaaagcttagaaaaagcaaattcaccgctgatctatcgtgtgcatgatgaaccc
tcagacgagaaaattctcgcccttggtttcttcttgccaaccattggcatgaaatgggca
cgcggcgcgaaaaaaacagcagaacgctttaacgacctacttgcacaagcaagacgcaca
gaacacgagcaccttgtttcggaaatggtgttgagatcacaatctcaagcgagatacgca
cctgagaattttggccatttcggactcaatctcgcgaaatatgcgcacttcacatctcct
attcgtcggtattccgatctcatcgtgcaccgcgcgctcattcgggcgctcagccttggt
ccagatggattatcagatgttgagtccaaacgccttgaagaaatcgcagaacacctgacc
accacagagcgccgctctatggcagccgagcgtgatgcaacagaccgctatttagtggcc
ttcatgtctgaaaaagttggcgctgaatttcaaggccgtatcgcaggcgtcaccaaggct
ggtatgtttgtgaagctcgatgatagcggtgctgatggcttcataccggcagcccgtctc
tctgatgaatactggctgtatgatgagcacaatgctgctcttgtggctgaaggctctgaa
aaacgctatgaaatgggcatgcctgtactcgtaaagcttgaggaagcaacgccgcttaca
ggtggattgctatttgaaatgctgtctgagccacgtgaggcacgcgaagatctggtaaag
cccaagcgtgagcgtcgtggtcgaaaccatccaccacgcggcaataagggcagcaaaaaa
cgcccttcaaatagatctgcgcggtccaatgggtcacgttctggcaagaagaaataa
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