Hirschia baltica: Hbal_2231
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Entry
Hbal_2231 CDS
T00945
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hba
Hirschia baltica
Pathway
hba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hbal_2231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hba03019
]
Hbal_2231
Enzymes [BR:
hba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hbal_2231
Messenger RNA biogenesis [BR:
hba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hbal_2231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
MucB_RseB
Motif
Other DBs
NCBI-ProteinID:
ACT59911
UniProt:
C6XMJ7
LinkDB
All DBs
Position
complement(2388319..2390628)
Genome browser
AA seq
769 aa
AA seq
DB search
MTKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPL
LHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR
DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE
RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNL
QDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLV
ATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDI
QRQIRMKIPIVDLPEGFIDQAEEITANATPVIEERPRGRGGRDGARGGRDGGRGGRDGGR
GGRDGGRGGRDGGRGRSEGRGGRDGGGYKGRDDRPQREDRPQREERPFRAEASSEPRYEG
RQDRFKRSEGGERQERPNRDDRFARRERPEGERSEGRSEGRRDNRSEGRGGYQGRREGGR
EEGRGGYQGRSEGGRGEGRGGYQGRTEGGRGEGRGGYQGHSEGGRNEGRGGYQGRREGGR
DENRGGYQGRDGGDRRPPNRDERMAGERPPSRGYEGSNPRPRTNYDKTRAADGRSWGNDR
KEGGRSEGGRSEGGERTWNKKKSADGERKQTPRGRSERPTYPGKGGGSNRADGEGNGNRF
KKRGPRSEDGPDFRRNDGGFSSPKKPSGNGAKRSGPSDGKPRRKPSFAR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaattttctgattttgatctggctagtccagtccttaaagccttggataaagaa
ggctacgaaacaccgactccaattcaagcacaagctattccattggttatggaaggcggc
gatattctaggtatcgctcaaacaggtacaggtaaaacagcagcttttgctttgccgctt
cttcaccacctttgtaaacttccagacatgcccggccctggtgctgtgcgttgtcttgtt
attgcgccaacgcgtgaacttgcgagccagattgctgaagcattcagcaaatatggccaa
tgtctttcattgcgcgtactgaaagttttcggtggtgttcctattcgtaaacaaatgcgt
gacctacaccgcggtgcagacgttttggttgcaacaccgggtcgtttgattgacttgatg
gagcagggcgctgttgatctttcttacgtcgagaaacttgttcttgatgaagcagaccaa
atgcttgatcttgggtttattcacccattgcgccgtattgctgctgctgttccaaaagaa
cgtcaaacattgttcttttctgcgacaatgccatcaaacgtgtcagggctggcaaaccaa
tttttgacaaacccgaaaaaagtgtcgattgctcaagagtctacaactgctgagcgcgtg
acacagactatgtctcacgtgaaccaagcgcaaaaaggtccattgcttcttgtgaactta
caagatgaatcaattgaccgtgcattggtgtttacgcgtaccaaacatggtgcagacaaa
gttgtttctaaattgatgaatgctggtatccgttgtggtgctatccacggaaacaaatct
caagctcagcgtgaacgcgcattgaatgcatttcgtaatggtgattcaaaagtgcttgtg
gcaactgatattgcagcgcgtggtattgatgtcccgggcgtatcgcacgtgttcaactat
gaaattccaaacgtacctgaacaatatgttcaccgtattgggcggactgcgcgtgcaggg
cgtgaaggtaaagcgatttcttttgtgtctcgtgacgaaaagaaatacttgcttgatatt
caacgtcaaatccgtatgaaaattcctatcgtggatcttccagaaggatttatcgaccaa
gctgaagaaatcactgcaaatgccactcctgtaattgaagagcgtccacgtggacgcggc
ggcagagatggtgcacgtggtggacgcgatggtggacgcggcggtcgtgacggtggccgt
ggtggtcgcgatggcggacgtggcggtcgtgatggtggtcgtggtcgctcagaaggtcgt
ggtggtcgtgatggcggcggttataaagggcgtgatgatcgtcctcagcgtgaagatcgc
cctcaacgtgaagaacgtccattccgtgctgaagcaagttcagagcctcgctatgaaggc
cgtcaagatcgctttaaacggtctgaaggtggggaacgtcaagagcgtccaaaccgtgat
gaccgtttcgcacgacgcgaacgtcctgaaggtgagcgttctgaaggtagatcagaagga
cgccgtgataaccgtagcgaaggccgtggtggataccaaggtcgccgtgaaggtggtcgt
gaagaaggccgtggcggttatcaaggtcgttctgaaggtggccgtggtgaaggtcgtggc
ggatatcaaggtcgcactgaaggtggccgtggtgaaggtcgtggaggttatcaaggccat
tctgaaggtggtcgcaacgaaggtcgcggtggctatcaaggacgccgtgaaggtggacgt
gatgaaaatcgtggtggataccaaggccgtgatggtggtgatcgtagacctcccaaccgt
gacgaacgtatggcaggtgagcgtcctccaagtcgtggctatgagggatcaaacccgcgt
cctcgtacaaactatgataaaacacgcgctgctgatggtcgttcatggggtaatgatcgc
aaagaaggtggccgttctgagggcggccgttctgagggcggagagcgcacttggaataag
aaaaagtctgccgatggtgagcgcaagcaaacaccacgcgggcgttctgagcgtccaaca
tacccaggcaaaggcggcggttctaaccgtgctgatggtgaaggtaatggaaaccgtttc
aagaaacgtggtccacggtctgaagatggacccgatttccgccgcaatgatggtggtttt
agctcgcctaagaaacctagtggcaatggagctaaacgcagtggaccatctgatggcaaa
ccgcgccgtaaaccaagctttgctcgctaa
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