Hyphomonadaceae bacterium UKL13-1: AEM38_09655
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Entry
AEM38_09655 CDS
T04338
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AEM38_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbc03019
]
AEM38_09655
03016 Transfer RNA biogenesis [BR:
hbc03016
]
AEM38_09655
Enzymes [BR:
hbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AEM38_09655
Messenger RNA biogenesis [BR:
hbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AEM38_09655
Transfer RNA biogenesis [BR:
hbc03016
]
Prokaryotic type
tRNA degradation factors
AEM38_09655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AMS29658
UniProt:
A0A7U4TMM2
LinkDB
All DBs
Position
2067329..2069662
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AA seq
777 aa
AA seq
DB search
MKTKGRGNGQKGKPPKKTVTRPALGVPDKATLLAFLNEAKTAIGPREIAIAFGIKGDERR
ALKAALRELADEGAIAKTGRKEVASRTVPPEGGMFQLIEIDSQGDLMARALGREDELYGP
LVRLASTRAQVRHEGPPPGVGDRFIGKTRQTHEGEYEVQIIKRLGRVIERVFGVFMAADV
RPGQAGSSGGRLVPADKKQRHELMILPEHAKGARNGDLVAARLLPHRGYGPKKAEIIEIF
GNNENPKAASILAIAAHAIPMGFTAEEEEEAQAAGPAPLGKREDLRHIPLVTIDPDDARD
HDDAVYAEALPGGGHKILVAIADVAHYVTPGSALDEGALMRGNSVYFPDRVVPMLPERLS
ADLCSLMDGVERPCLALEIKIDAGGHKQSHRFLRGLMKSAASLTYTQAQMAIDGMPDAMT
APLLDTVLRPLWAAYRALEKARDQREPLEINSPERKIILSPEGKVLSIGLRERFDAHRLI
EEMMILSNVCAAETLEDKRSPLIYRVHDQPSETKLAALGDFLATVNMKWAKGQPPSPARF
NRVLELAAPTEHAEMINEIVLRTQAQAIYDTDNLGHFGLNLRKYAHFTSPIRRYADLIVH
RALISALGFGEDGLKKTSPDQLKKVAEAITATERRGMAAEREATDRYVAAFLSERVGATF
EARITSVNRFGVFVRLEETGGDGLVPVMRLGSEYFHHDEAGHALIGAETGDRWELGAKVR
VRLLEATPVSGGLLFEIVSQPKVGPVPGLRALRGPARGTTPMRKTGGPPRGVTRRKR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaagggtcgtggcaacggccaaaaaggcaaaccaccgaaaaagacggtgacg
cgccccgccttgggcgtgccagacaaagccacattgctggcctttttgaacgaagccaag
acagccattggcccgcgtgagatcgcgattgcttttggcatcaagggggatgagcgccgc
gccttgaaagctgccttgcgtgaactggccgatgagggcgcgattgccaaaaccggtcgc
aaggaagttgccagccgcaccgtgccccctgagggcggcatgttccaactgatcgagatc
gacagccaaggcgatctgatggcgcgcgctctcggccgcgaagatgagctttatggaccg
ctggtacgccttgccagcacgcgcgcgcaagtccgtcatgaaggcccgcctccgggcgtt
ggtgatcgcttcatcggcaagacccgtcagacccatgagggcgagtatgaggtccagatc
atcaagcgcctcgggcgggtgatcgaacgcgtatttggcgtctttatggcggccgatgtg
cgccccggccaagccggttctagcggtggcagacttgtcccagcggacaagaagcaacgc
cacgaattgatgatcttgccagagcatgccaaaggcgcgcgcaatggcgatctggttgcg
gcgcgcttattaccccatcgcggctatggcccaaagaaggcggaaatcattgagattttc
ggcaataatgaaaatccaaaagcggcctccattttggcgattgccgcccacgcaattccg
atgggctttaccgctgaagaggaagaagaggcccaagccgcagggcccgcccctttgggc
aagcgcgaagatttgcgccacattcccttagtcaccatcgacccagatgatgcgcgcgac
catgatgatgcggtctatgcggaagccttgccgggcggtggccataagatattggtcgcg
attgccgacgtcgcccattatgtaacgccgggctctgccttggatgaaggtgcgctgatg
cgcggcaattcggtctatttccctgaccgggttgtccccatgctgccagagcgtttgtca
gccgacctatgctcactgatggatggcgttgagcggccgtgcttggcactcgagattaag
attgatgctggcggccacaagcagagccaccgcttcttgcgcggcctgatgaagagtgcc
gccagcctcacctatacccaagcgcaaatggccattgacggcatgccagacgcgatgaca
gcacccttgctcgacacggtgctgcggccgctttgggccgcctatcgcgcgctggaaaaa
gcacgcgatcagcgcgagccgttagagatcaacagccctgaacgcaaaatcatcctgtcg
ccggaaggcaaagttctttcgattgggctgcgcgagcgctttgatgcccaccgcctgatt
gaggagatgatgatcctctccaatgtgtgtgcggcagagactttggaggacaagcgttcg
cctctgatctaccgcgtccatgatcagccgagcgaaaccaagctggccgctttgggtgat
tttctggcgaccgtgaacatgaaatgggccaagggccaaccgcccagccctgcccgcttc
aatcgggtgttggaattggccgcgccgaccgagcatgccgaaatgatcaatgagatcgtc
cttcgcacgcaagctcaagcgatttatgataccgataatctgggacacttcggcctgaac
ctgcgcaaatatgcgcacttcacctcgcccattcgccgctatgccgacttgatcgtccac
cgcgcactgatcagtgctttgggctttggcgaggatggcctgaagaaaacaagcccagac
caactcaaaaaagtcgccgaagccattaccgctaccgagcggcgcggcatggccgccgag
cgtgaagccaccgaccgctatgtcgcggccttcttgtcagagcgggttggcgcaacattt
gaagcgcgcatcaccagcgtcaaccggtttggcgtctttgtccgccttgaagagaccggc
ggcgatgggctggtgcctgtcatgcgcttaggcagcgaatatttccatcatgacgaagct
ggccacgccctgattggcgcagaaaccggcgaccgctgggaattgggtgcgaaggtgcgc
gtgcgcctcttagaagcaacccccgtctcaggcgggctgttgtttgagattgtgagccag
ccaaaagttgggcctgtgcccggtctgcgcgcgcttcgaggccctgcgcgcgggacaacg
cccatgcgcaagaccggtggtccaccgcgcggtgtgacgcgtcgaaagcgctag
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