Hyphomonadaceae bacterium UKL13-1: AEM38_13325
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Entry
AEM38_13325 CDS
T04338
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03420
Nucleotide excision repair
hbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AEM38_13325
03430 Mismatch repair
AEM38_13325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbc03400
]
AEM38_13325
Enzymes [BR:
hbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AEM38_13325
DNA repair and recombination proteins [BR:
hbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AEM38_13325
MMR (mismatch excision repair)
Other MMR factors
AEM38_13325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AMS30212
LinkDB
All DBs
Position
complement(2856441..2858831)
Genome browser
AA seq
796 aa
AA seq
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MSSEPNSPQPALTISQRAMARAPGTMVGPAGGLDHPWMVGLNEQQREAVEALDGPVLVLS
GAGTGKTKVLTSRLAQLLVTGRAKPWEILSVTFTNKAAREMRDRTQLLIGPAAEGLRWLG
TFHSTSAMILRRHAELVGLKPSFTVLDTDDQIRLMKQVIEAENIDQKRWTPRFLASLIDG
WKNRALTPEKVPADESFLFANGKGAKLYALYQSRLKVLNCVDFGDLLLETISLFLKEPDL
LAEYHDRFKYILVDEYQDTNVAQYLWLRLLARKRKNICVVGDDDQSIYGWRGAEVDNILR
FEHDFPGTKIVRLERNYRSTPHILAAASYLIASNKNRLGKTLWTDIPDGDRVLVRGIWDG
EAEARLIADDIEQWRRTGRRYDESAVLVRASWQMRAFEERFLMLQIPYKVIGGPRFFERA
EIRDAHAYLRLIRSLDDDLAFERIVNVPKRGIGDTSVQRLGTAARLAGVPLFTMASQLLG
SDELKGPARTGLTRFIHQLEHWRKKALELPHTELAELILDESGYTDMLKADKNPQSVSKL
DNLKELVRSMGQFDTLAAYLEHIELVMDLDRTEEGDAVQILTLHAAKGLEWPLVFLPGWE
EEVFPSRRALDEKGDKALEEERRLAYVGITRARESARISFAANRQIYGRWNSVLPSRFVD
ELPDGHVDAVSDTGYFNQGTGGAAERFAAYGPLSTQPGNGFGTGYESPGWKRAQAAAALS
KLTPSMAKGFGGPIIDGEAKLLARTGAKDATYAVGQRIFHDKFGYGAVRHVEGSKLTIQF
EKSGEKKVLDSFVRPA
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgagcccaattctccccagccagccttgacgatttctcaacgtgcgatggcg
cgtgcgccaggcactatggttgggcctgcaggcgggcttgatcacccgtggatggtgggc
ctcaacgagcaacaacgcgaggccgtcgaggcgctggatggccctgttttggtgttatct
ggtgccgggaccggaaaaactaaggtgttgacgtcacgcttggcacaattgttggtgacg
ggtcgggcgaagccttgggaaatcttgtcggtgaccttcaccaataaagcggcgcgcgaa
atgcgcgatcggacccagcttctcattgggccagcggctgagggcttacgttggctcggc
accttccattcgacgagtgcgatgatcttgcgccgtcatgcggaattagtcggcctcaag
ccaagcttcacggttctcgataccgatgatcaaatccgcttgatgaagcaggtgattgaa
gcggaaaacatcgaccaaaaacgctggacgccgcgcttccttgcaagcttaatcgacggg
tggaagaaccgtgcgttgacgcccgaaaaagtcccggccgacgagtcgttcctgttcgcc
aatggcaagggcgcgaagctttacgcgctgtaccaatcccgcctgaaagttctcaattgc
gtcgatttcggcgatctcttgctggagaccatcagtctattcttgaaagagcccgacctg
ctggcggaatatcacgaccgcttcaaatatattctggtcgacgagtatcaggataccaat
gtcgctcaatatttatggttgcgcctcttggcacgcaagcgcaagaatatctgcgttgtt
ggggacgatgatcagtcgatttacggctggcgtggagcggaagtcgacaatattctgcgg
tttgagcatgactttcctgggacgaaaatcgtccggctagaacgcaattaccgatcaacg
cctcatattctagccgcagccagctatctgatcgccagcaacaagaatcgccttggaaag
acgctttggaccgacattccagacggcgaccgcgtacttgtgcgcggcatttgggacggg
gaagccgaagcgcgtttgatcgcggatgatattgagcagtggcgtcgcactggtcgccgg
tatgatgaaagtgccgtcttggtgcgtgcgtcgtggcagatgcgcgcctttgaagagcga
ttcttgatgttgcagattccctataaagtcattggcgggccgcgcttttttgaacgggca
gaaattcgcgatgcacatgcttatttgcgcctgatccggtctttggatgatgatttagcg
tttgagcggatcgtcaatgtccccaagcgtgggattggcgatacgagtgtgcagcgcttg
ggcactgctgcccgtctagctggcgttccgttattcaccatggcgagccaattattgggc
agcgatgagttgaaaggccctgcgcgcacgggtctaacgcgcttcatccatcagctagag
cattggcgcaaaaaggcactggaactgccgcacacggaattggcagagcttattctggat
gaaagcggctataccgacatgctgaaggccgacaaaaaccctcagtcggtctccaagctc
gacaatttgaaggaattggtccgctcaatgggccagttcgacacgctggcggcctatctg
gaacacatcgaattggtgatggacctcgaccgcaccgaagagggtgatgcggtacaaatt
ctgacgctacatgctgcaaaaggccttgaatggcctttggttttcctgcccggctgggag
gaagaagtgtttccgtcgagacgtgctttggatgaaaaaggtgacaaagccttagaggaa
gagcgtcgccttgcttatgtcggcattacgcgtgcacgcgaaagtgcgcgcatcagcttt
gccgctaatcgccagatttatggcagatggaacagcgtcctgcccagccgatttgtcgat
gagctccctgatggccatgtcgatgcagtgtcagacacgggctatttcaatcaaggtaca
ggtggcgcggcagagcgctttgccgcctatggcccgctttcaacccagccaggcaatggc
tttgggactggttatgagagccccggctggaagcgcgcgcaggctgcagcggcattaagc
aagctgacgcctagcatggcaaaagggtttggtgggcccatcattgatggcgaagctaag
cttctggcgcgcaccggggccaaggatgccacctatgccgtcggccaacgcattttccat
gataaatttggctatggcgcagtacgtcatgttgaagggtctaaattgaccattcagttt
gaaaaatctggcgaaaagaaagtgctcgacagtttcgtacgccctgcctga
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