Halomonas beimenensis: BEI_0946
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Entry
BEI_0946 CDS
T05125
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hbe
Halomonas beimenensis
Brite
KEGG Orthology (KO) [BR:
hbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hbe03016
]
BEI_0946
Enzymes [BR:
hbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BEI_0946
Transfer RNA biogenesis [BR:
hbe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BEI_0946
Prokaryotic type
tRNA splicing ligases
BEI_0946
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATJ81933
UniProt:
A0A291P4W1
LinkDB
All DBs
Position
complement(1011465..1012895)
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AA seq
476 aa
AA seq
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MNPSSLTRLDDFTWRIEPSGRMRVPGVLYANEALVGAMDDKVREQLVNVASLPGIVQAAY
VMPDAHWGYGFPIGGVAAFDADRGGVVSAGGVGFDISCGVRCLHTGLKRDDLPSLQSRLA
DELYRHIPAGVGSRGRIHLDEAGMEAMLAGGAEWAVAPGWGRPADLERIEERGRMTDPRP
EAVSDKAKRRQRDEMGTLGSGNHYLEVQEVETLHDRATAEAFGLAEGDVVVFIHCGSRGL
GHQVGTEFLRAMTLAAPEHGLELPDRELACAPIRSELGQTYLGAMRAAINCALANRQILT
QLTREVFAELCPSADLRLLFDVSHNTCKVEEHVIDGQPRRLYVHRKGATRAFGPGHPDLP
DAYREVGQPVLIGGSMGTASHVLAGNRQAGIQAFASACHGAGRAMSRRRALKSWQGRQLI
DELRGRGILVRSPSSKGVAEEAPGAYKDVDAVVDAAEAAGLARRVAWLLPRVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttctagcctgactcgcctggatgacttcacctggcgcatcgaacccagcggc
aggatgcgggtccccggcgtgctctacgccaatgaggctctggttggggccatggacgac
aaggtccgcgaacaactggtcaacgtggcctccctgccggggatcgtccaggcagcctat
gtcatgcccgatgctcattggggctacggcttccccatcggcggggtggcggccttcgat
gccgaccggggcggggtggtctccgccggcggggtgggcttcgatatctcctgcggcgtg
cgctgcctgcataccggcctcaagcgtgacgacctcccatcgctccagtcccgcctggcc
gatgagctctaccgccacatcccggctggggtcggcagccgcgggcggatccacctggac
gaggccggcatggaggcgatgctggccggcggcgccgagtgggcggtggccccgggctgg
ggcaggccggcggacctggaacgcatcgaggagcgggggcgcatgaccgacccacggccg
gaggcggtctccgacaaggccaagcgacgccagcgcgacgagatgggcaccctgggctcc
gggaaccactacctggaggtccaggaggtcgagacgctccacgaccgcgccaccgccgag
gccttcggcctggccgagggcgacgtggtggtgttcatccattgcggctcccgcggcctg
gggcaccaggtcggcaccgagttcctgcgggccatgacgctcgcggccccggaacatggc
ctcgagctgccggaccgggagctcgcctgtgcccccatccgctccgagctcggccagacc
tacctcggcgccatgcgcgccgccatcaactgcgccctggccaatcgacagatcctgacc
cagctcacccgggaggtcttcgccgagctgtgcccctccgccgacctacgcttgctgttc
gacgtctcccacaatacctgcaaggtcgaggagcatgtgatcgacgggcaaccgcgacgg
ctctacgtgcatcgcaagggggcgacccgcgccttcgggccgggccatcccgacctgccc
gacgcctaccgcgaagtcggccagccggtgctgatcggcggctcgatgggcacggcgtcc
catgtgctggccggcaatcgccaggcgggcatccaggccttcgcctcggcctgtcatggc
gccggccgcgccatgagccgacgtcgggcgctcaagtcgtggcagggacgacaactgatc
gacgagctgcgcggtcgcggcatcctggtgcgcagcccctcctcgaagggcgtcgccgag
gaggccccgggggcctacaaggacgtcgacgccgtggtcgatgccgccgaggctgccggc
ctggcccgccgggtcgcctggctcctcccccgcgtctgcatcaagggctga
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