Halomonas beimenensis: BEI_3285
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Entry
BEI_3285 CDS
T05125
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hbe
Halomonas beimenensis
Pathway
hbe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BEI_3285 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbe03400
]
BEI_3285 (sbcB)
Enzymes [BR:
hbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BEI_3285 (sbcB)
DNA repair and recombination proteins [BR:
hbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BEI_3285 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BEI_3285 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BEI_3285 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ATJ84272
UniProt:
A0A291PBL5
LinkDB
All DBs
Position
complement(3488610..3490100)
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AA seq
496 aa
AA seq
DB search
MAQSQAAPLTFLWHDYETFGADPRRDRPSQFAAIRTDAEFNEIGEPLELFCKPADDYLPH
PQACLITGITPQQARRRGLPEAEFAGRVMAAMSEPGTCALGYNSLRFDDEVSRHLFYRNL
LDPYAREWQNGNSRWDLIDVVRAFHALRPDGIEWPTREDGTPSFRLEDLTAANGIEHAGA
HDALADVRATIALARLLRDRNPKLFDYLLGLRGKRQVARQLDVPGRKPMLHISRRYPASR
GCSALVMPLAEHPTNPNGVIVYDLSVDPEPLLSLTPEQIRERVFVSNDDLAEGETRIPLK
VIHINKCPVVLPPSALKDTAGPRQGEYGELVARLSLDMDACRRHWKTLAEHPEVVARVGE
AFAAPPPGPPRDPDLMLYSGGFFSPSDRQQMERVRAADPWDLVDARFAFQDPRLEEMVFR
YRARSYPDTLTGEEQARWEAFRWERINDPAIAGFALKDFAREIERLNQSPLGDRERQILE
ELVMHVEAIMPPQAFG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtcgcaagccgcccccttgaccttcctctggcacgactacgagaccttcggt
gccgacccgcgtcgggaccggccttcccagttcgccgccattcgcaccgatgccgagttc
aacgagatcggcgagcccctggaactcttctgcaagcccgccgacgactatctgccgcat
ccgcaggcctgcctgatcaccggcatcacccctcagcaggcgcgtcgccgtggccttccc
gaggcggagttcgccggtcgcgtcatggcggcgatgagcgagcccggcacctgcgccctg
ggctataacagcctgcgtttcgacgacgaggtcagccgccacctcttctaccgtaacctg
ctcgacccctatgcccgggagtggcagaacggcaactcgcgctgggacctgatcgacgtg
gtgcgggcctttcatgccctgcgcccggacggcatcgagtggccgacccgggaggacggc
acgccgagcttccgcctcgaggaccttaccgccgccaacggtatcgagcatgccggggct
cacgacgccctggccgacgtgcgggcgaccatcgccctggctcgactgctgcgcgaccgc
aaccccaagttgttcgactacctgctgggccttcgcggcaagcgccaggtggctcgccaa
ctggacgtgcccgggcgaaagccgatgctgcacatctcgcggcgctatccggcgagccgc
ggatgcagcgccctggtgatgccgctggccgagcatcccaccaaccccaacggggtcatc
gtctatgacctctcggtggatcccgagccattgctgtccctgacccccgagcagatccgc
gagcgggtcttcgtcagcaacgacgacctggccgagggggagacgcggatcccgctcaag
gtcatccacatcaacaagtgtccggtggtgttgccgcccagcgcgctgaaggacaccgcc
gggccccgtcagggagagtatggcgagctcgtcgcacggctgtcgctggacatggacgcc
tgccgccggcactggaagaccctggccgagcatcccgaggtggtggcccgcgtcggcgag
gccttcgccgccccgcccccggggccgccccgggaccccgacctgatgctgtactccggg
gggttcttctcgccgtcggatcgccagcagatggagcgggtccgggccgcggatccctgg
gacctggtggacgcccgcttcgccttccaggatcctcgcctggaggagatggtgttccgc
taccgggcgcgcagctacccggataccctgaccggcgaggagcaggcccgctgggaagcc
ttccgctgggagcgcatcaacgacccggccatcgccggcttcgcgctgaaggacttcgcc
cgggagatcgagcgcctgaaccagtcgccgctcggcgaccgggagcgccagatcctcgag
gagctggtgatgcatgtggaggccatcatgccgccccaggccttcggctga
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