Halomonas binhaiensis: E4T21_01830
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Entry
E4T21_01830 CDS
T08791
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hbh
Halomonas binhaiensis
Pathway
hbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E4T21_01830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbh03021
]
E4T21_01830 (rpoC)
03400 DNA repair and recombination proteins [BR:
hbh03400
]
E4T21_01830 (rpoC)
Enzymes [BR:
hbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E4T21_01830 (rpoC)
Transcription machinery [BR:
hbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E4T21_01830 (rpoC)
DNA repair and recombination proteins [BR:
hbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E4T21_01830 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_YknX
DUF3150
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
QEM80430
UniProt:
A0A5C1NBW2
LinkDB
All DBs
Position
436195..440412
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQSQTDEFDAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMLMDMTLRDIERVLYFESFLVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQAMLKDIDLEEEIERLREEIPQTNSETKIKKLSKRLKLLEAFYGSGNDPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGQASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMVFSDLNEVERAFGTQ
NVSLHAKVKVRLAEVDVDEETGERSEHRRLRETTVGRALLFRILPEGVPFELVDQAMKKK
AISKLINEVYRRSGLKSAVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKAEIVEAAEE
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDQVAKAMMAGISKESVIDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITENDCGTERGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPATEEVLIPRGTLLDEAWCEQLDTMGVDEIVVRSTITCETTHGVCSSCY
GRDLARGHQVNIGEAAGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNIKFVERGDGKLVVVSRSSALAVADEHGREREYYKLPYGAELSVRDGDDVAAGQSVAK
WDPHTHPIVAEAEGTVQFADMDEGLTIHRSVDEMTGLSSIEIIESAARPMAGRDKRPMIL
LNDAAGKPVTVSGSDTPVQYLLPGKAIVTAENGAHIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKEPAVLAEISGVISFGKETKGKRRLTITPSEGDPFEMLIPKWRQIAVFE
GESVEKGEVISDGPSNPHDILRLLGIAELAKYIVAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEISDAGDSDFIPGDQVELVRVLEQNAALQAQDKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHEERRRKREDAERSF
APSAYDVEQELGAQLTALDSDDDEL
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcacagtctcagactgatgagttcgatgcgatc
aagatctcgcttgcctcgcctgacatgatccgttcatggtcattcggtgaggtcaagaag
cccgagaccatcaactaccggaccttcaagcctgagcgcgacggtctgttctgtgccaag
atctttggcccagtcaaggactacgagtgtctgtgcggcaagtacaagcgcatgaagcac
cgtggcatcatctgtgaaaagtgtggtgttgaagtcaccaaggctgccgtgcgccgtgag
cgcatgggccatatcgagctggccagccctgtcgcgcatatctggttcctgaagtctctg
ccgtctcgtatcggcatgctgatggatatgaccctgcgtgacattgagcgggttctgtac
ttcgaaagcttcctggtcatcgacccgggcatgaccacacttgagcgtggccagttgctc
aacgatgaacagtatttcgaagctctcgaagagttcggtgacgatttcgatgctcgcatg
ggtgccgaagccgttcaggcaatgctcaaggacattgatctggaagaagagatcgagcgc
ctgcgcgaagagattccgcagaccaactctgaaaccaagatcaagaagctgtccaagcgt
ctcaagctgctcgaagccttctatggttccggtaatgatccggcctggatggtgatggaa
gtgttgcctgtgctgccgccggacctgcgtccgttggtgccgctggatggcggccgcttc
gcgacttcggatctcaacgatctgtaccgtcgtgtgatcaaccgcaacaaccgcctcaag
cgtctgctggacctcaatgcgccggatatcatcgtgcgcaacgagaagcgtatgctgcag
gaatccgtggatgcactgctcgacaatggtcgtcgtggtcgtgccatcactggttccaac
aagcgtccgctgaagtccttggccgacatgatcaaaggtaagcagggtcgcttccgccag
aacctgctgggcaagcgtgtcgactattccggtcgttccgtcatcacggtggggccgacc
ctgcgtctgcaccagtgtggtctgcccaagaagatggcgcttgagctgttcaagccattc
atctacgccaagcttcaggccagtggtcaggcctcgaccatcaaagctgccaagaagatg
gtcgagcgcgagctgcctgaagtatgggacatcctcgctgatgtgattcgagaacatccg
gtactgctcaaccgtgcaccgactctgcaccgtttgggcatccaggcgttcgagccgctg
ttgatcgaaggcaaggctatccagctgcatccgctggtctgtgccgcctacaacgctgac
ttcgacggtgaccagatggcggtacacgtaccgttgactctggaagcccagcttgaagct
cgtgccctgatgatggccaccaacaatgtgctgtctccagccaacggcgagccgatcatc
gtaccgtcccaggacgttgtcctcggtttgtactacatgacccgtgagcgtatcaacgcc
aagggtgagggcatggtgttctccgacctgaatgaggtcgagcgtgcctttggcacccag
aacgtctccttgcacgcaaaggtgaaagtgcgtcttgcggaagtcgatgtcgacgaggag
accggtgagcgcagcgagcatcgccgtctgcgcgagaccactgtcggtcgtgcgctgctg
ttccgcatcctgcctgaaggagtgcctttcgaactggtcgatcaggccatgaagaagaag
gctatctccaagctgatcaacgaggtgtatcgtcgctcagggctgaagtctgcggttatc
tttgctgaccaactgatgtacaccggcttccgtctggccacttggtctggcgcttccatc
ggcgttaacgatttcgttattcctgaagccaaggccgagatcgtcgaggcggcggaagaa
gaggtcaaggaaatcgaggaccagttctcctccggtctggtgaccgcgggtgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaatgaccaggtcgccaaggcgatgatggcg
ggtatttccaaggaaagcgtcattgatcgcgatggcaacgaagtcgaacaggactcgttc
aacagcgtgttcatcatggctgactccggtgctcgtggtagtgctgcccagatccgtcag
cttgccggtatgcgtggtctgatggccaagccggatggctcgatcatcgagacgccgatc
gttgccaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgct
cgtaagggtctggcggataccgctctgaagacggccaactccggttacctgacccgtcgt
ctggtcgacgtagctcaagacatggtcatcaccgagaatgactgtggtaccgagagaggg
ttgaccctgcatccggtcatcgaggggggcgatatcatcgtttccctggcccagcgcgtg
cttggtcgtgtggtggctcaggacgtgatcgatccggctaccgaggaagtgctgatcccg
cgtggtacgctgctcgatgaagcctggtgtgaacagctcgacaccatgggcgtcgacgag
atcgtggtgcgcagcaccatcacctgtgaaaccactcacggcgtgtgttcctcgtgctat
ggccgtgatctggcccgtggtcatcaggtcaacatcggtgaggcggccggtgtcattgcg
gcccagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatctcgtgcttctgccgtggatagtgttcaggtcaagcatggcggcaaggtgcgc
ctgcacaatatcaagttcgtagagcgcggtgatggcaagctggtggtagtgtcccgctcc
agtgccttggcggtagccgatgagcatggtcgtgagcgcgagtactacaagctgccttat
ggtgccgagctgtccgtgcgtgatggtgatgacgtcgctgccggccagtccgtggccaag
tgggatccgcacactcatccgatcgtagccgaggccgaaggtaccgtgcagtttgcggac
atggacgaaggcctgaccattcaccgcagcgtagatgagatgacaggtctgtcgtctatc
gagatcatcgaatctgcagcacgcccgatggccggtcgcgacaagcgtccgatgatcttg
ctcaacgatgccgcaggcaagccggtgaccgtgtctggttcagacaccccggtgcagtac
cttctgccgggcaaggcgattgtcactgccgagaatggcgcgcacatcggtgttggtgaa
gtcgttgcccgtatcccggtggaggcgtccggtaacaaggacatcaccggtggtctgccg
cgggttgctgacctgtttgaagcgcgtaagccgaaggagccggctgtccttgctgaaatc
agcggtgtgatcagctttggcaaggaaaccaagggcaagcgtcgtttgaccatcactccg
agcgagggcgatcccttcgagatgctgattccgaagtggcgtcagatcgcggtgttcgaa
ggtgagtcggtggagaagggtgaggtgatctcggatggtccgagtaacccgcacgatatt
ctgcgcctgttgggtatcgctgagctggccaagtacatcgtcgccgaggttcaggacgtc
tatcgcctgcagggcgtaggcatcaacgacaagcacatcgaagtgatcgtgcgccagatg
ctgcgtaaggtcgagatctccgacgcaggtgattccgactttatcccaggtgatcaggtc
gagttggtgcgtgttcttgagcagaacgcagcgcttcaggctcaggataaattcccggcc
aagtatcagcgtctgctgctgggtatcaccaaggccagcctggcaaccgagtcgttcatt
tctgcggcttccttccaggaaacgacccgcgtactgaccgaagctgcggtgaccggcaag
cgcgattacctgcgtggcctgaaagaaaacgtggttgtggggcgtctgattccggctggt
accggtctgacccatcacgaagagcgtcgccgtaagcgtgaagatgcagagcggtcgttc
gctccgtcagcctacgacgtcgagcaggagctgggagcccagcttaccgcacttgactcg
gatgacgacgaactctga
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integrated database retrieval system
