Halomonas binhaiensis: E4T21_06870
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Entry
E4T21_06870 CDS
T08791
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hbh
Halomonas binhaiensis
Brite
KEGG Orthology (KO) [BR:
hbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbh03019
]
E4T21_06870 (hrpA)
Enzymes [BR:
hbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E4T21_06870 (hrpA)
Messenger RNA biogenesis [BR:
hbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E4T21_06870 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_25
AAA_30
NACHT
SRP54
Apolipoprotein
At5g52880_ARM
PhoH
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
QEM81288
UniProt:
A0A5C1NFV1
LinkDB
All DBs
Position
1589343..1593368
Genome browser
AA seq
1341 aa
AA seq
DB search
MSTDTSSTSVHSDQLTLLKQLSASLEDVMLRDRPTLAKRLAGLQRRVREGKPVDRGLKEV
RDQLARSRQRLEERRTRSVHLEYPESLPVAARREDILKALASHQVVVVAGETGSGKTTQL
PKLCLELGLGRKGLIGHTQPRRLAARSVANRLAEEMQVNLGEQVGYQVRFTDQTDEGTLV
KLMTDGILLAETRHDPDLRRYDTLIIDEAHERSLNIDFLLGYLKRLLQRRDDLKVIITSA
TIDVQRFSEHFAQVGADGVKRPAPVVEVSGRTYPVEVRYRPLMRDAEDEEDLTLSEGILH
AVEEIDGIEREKRWFHGPRDILVFLPGEREIREVADVLRRADLKSTEVLPLYARLSNAEQ
NRVFAPHSGRRIVLATNVAETSLTVPGIRYVVDPGLVRISRYSYRAKIQRLPVEPVSQAS
ANQRKGRCGRVAEGVCIRLYDEEDYLSRPEFTDPEIRRTNLASVILSMLSLKLGDIEDFP
FIDPPDSRFITDGLRLLYELGAVDERNRLSPVGRSLARLPIDPRLARMVLAAEKEGALRD
VLVVVSALAVQDPRDRPAEKREAADQAHRRWQDPDSDFLALLNLWNGFEQAREELSGNRL
RRWCKQHYLSYLRLREWHDTFRQLRQLLRDMDIQVPPPEPRKADTGDGDESIAEASREQV
RRNSAAMHRALLTGLLSHLGTVTENREYLGARNRKFVIHPSSGLAKKSPKWVMAVELVET
SRLFARMVARIEPQWIEPLAGHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPVVTRRKVH
YGPIAQKESREIFIRRALVEGEFRTKGTFFAYNRALIEEVVDLEDRARRRDILVDEDTLY
DFYAERLPDGIVNGKGFEAWRKQAEHDDPGLLKFDRQALLARGAEEVTQEQYPDALDIDG
VRFPLAYHFAPGAEDDGVTMTVPAAMLSQLDPARLEWLVPGLLRDKCIALLKSLPKSIRR
QVVPIPDWVDAALEAMVPGNNSLCEALGEFLRVKTGVRLHMDDWRLDQLESHLVMNIRVV
DHKGKVLGQGRDLRALEQRFEAAAGEGARALAKAVEQHDRMEAFPSEPLAESRVTTQAGI
RVEAFPALVPDGEQLKLELFDHPGKARVAQRSGVVAAAMKRLPDQVRAIERLPGIPACAL
LFTKVGSKQQLVDDVVKAVFSQVVAVEPLPRSHAELEQRLEDVRAELVPFAETLIATLKQ
ALEGHLTVTKALKGNLSLALALVYSDLKAQMQRLVYPGFVTRAGAWLEAYPRYMEAAILR
LEKAPRERMRDQMHMQVVQEFESKLVARREAQRRGQFEDPELVEFGWWIEELRVSLFAQQ
LGTAMPVSEKRLQKRWAELTG
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgatacttcctctacttctgtacactccgaccagttgaccctgctcaagcag
ctttccgccagcctggaggatgtgatgctgcgtgaccggcccaccctggccaagcgtctg
gcagggttgcagcgtcgggtccgtgagggcaagcccgtggaccgcggactcaaggaagtg
cgtgaccagttggcgcgttcccgacaacgcctggaggagcgccgtacacgctcggtacat
ctggaatatccggagtcgctgccagtagccgctcggcgtgaggatatcctcaaggcgctg
gcatcccatcaagtggtggtggtggcaggtgaaacgggttcgggcaagacgactcagcta
cccaagctgtgtctcgagctgggactcgggcgcaaggggttgatcggacatacccaaccc
aggcgcttggcagcacgttccgtggcgaatcgcctggctgaggaaatgcaggtcaatctg
ggcgagcaggtcggttatcaggtgcgtttcactgatcagactgatgaaggcaccctggtc
aaattgatgaccgacggtatcctgctggccgaaacccgccacgatccagatcttcgtcgc
tatgacacgctgatcatcgatgaggcccacgagcgcagtctcaacatcgactttctgctt
ggctacctcaagcgtctgttgcaacggcgtgatgatctcaaggtgatcatcacctcagcg
accatcgatgtgcagcgtttcagcgagcactttgctcaagtgggggcggatggtgtcaag
cgcccagcgccagtcgtcgaggtctcggggcgtacctatccggtagaggtgcgttatcgg
cccttgatgcgtgatgccgaggacgaggaagacctcactctgagcgaaggcatccttcac
gcggtggaggaaatcgatggcattgagcgggaaaaacgctggttccatggtcccagggac
attctggtgtttctgcccggggaacgggaaattcgtgaagtagcggatgtattgcgtcgc
gcggatctcaaaagcacagaagtgctgccgctttatgcacgcctttccaatgccgagcag
aatcgggtgtttgcaccccacagtgggcggcggattgtactggctaccaacgttgctgaa
acatctctgacagtcccaggcatccgctatgtggtcgatccggggctggttcgtatcagc
cgctacagctatcgtgccaagattcagcgcctgccggtcgagccggtaagccaggccagt
gccaatcaacgcaaggggcgctgtggacgagtcgcggaaggggtctgcattcgcctctat
gatgaagaggattacctgtcgcgcccggagttcacggacccggagattcgtcgcacgaac
ctggcctcggtgatcttgtcgatgttgtcgctcaagcttggcgacatcgaagactttccc
ttcatcgaccctccggattctcgttttatcaccgatggcctgcgtctgctgtatgagctg
ggtgcggtggatgagcgcaatcggctttcgcctgttggtcgtagtctggcacgcctgcct
atcgatccacgcctggcgcgcatggtgctggccgccgagaaagagggcgctctgcgcgac
gtgctggtggtggtctctgcattggccgtacaggatcctcgcgatcgaccggcagaaaaa
cgcgaggcggccgatcaggcccatcgccgctggcaggatcccgactccgactttctcgca
ctgttgaacctgtggaatggcttcgaacaggcccgtgaagagctgtccggcaaccgtctg
cgacgttggtgcaagcagcactacttgagctatctgcgcctgcgtgaatggcatgatacc
ttccgccagctacgtcagttgctacgcgatatggatatccaggtgcctccacctgaaccg
aggaaggctgacactggcgatggcgacgagagcattgccgaggccagtcgtgagcaggtt
cgtcgcaacagtgcggcgatgcatcgtgccttgctgacgggcttgctgtctcaccttggc
acggtgaccgagaatcgagagtatctcggtgcgcgcaatcgaaaattcgtgatccatccg
tcttcggggctggccaagaaatcacccaagtgggtgatggcggtcgagctggtggaaaca
tcccggctgtttgccaggatggtcgcgcgcatagagccgcagtggatcgagccacttgct
gggcatctggtcaagcgcagctacagcgagccgcactgggaaatgaagcgggcccaggtg
gtggcttttgagcaggtgaccttgttcggcctgcccgtcgttactcggcgcaaggtgcat
tatgggcccattgcgcagaaggaatctcgcgagatcttcattcgccgtgcgttggtggaa
ggtgagttccgcaccaaagggacgttctttgcttacaacagagcattgatcgaggaagtc
gttgatctggaggatcgtgcacggcgtcgtgacattcttgtcgacgaagacacgctctat
gatttctacgccgagcgattgcctgacggtatcgtcaacggcaaagggttcgaggcgtgg
cgcaagcaggctgaacacgatgatccggggctgctcaagtttgaccgtcaagcactgttg
gctcggggagccgaagaggtcacgcaagagcagtatcccgatgcgctcgacatcgatggt
gtgcgtttccccctggcctatcactttgcgcctggcgcagaggacgatggtgtgaccatg
acagtaccggctgccatgctgtcgcagttggatcctgcccgtctggagtggctggtgcca
ggactgctgcgggacaagtgcatcgcgttgctcaagtctctgcccaagtcgattcgacgt
caggtcgtgccaatccccgactgggtcgatgccgcactggaagccatggtgccaggcaat
aatagcttgtgtgaggccttgggagagttcctgcgggtcaagaccggcgtacgcttgcac
atggacgactggcgtctggaccagttggagtcgcatctggtcatgaatatccgagtggtc
gatcacaagggcaaggtgcttggccaagggcgtgatctacgggcgctggaacagcgcttc
gaagccgctgctggcgaaggagcgcgagccctggccaaggcggtggagcaacatgacagg
atggaagcgtttcccagtgagccgctggccgagtcacgggtcacgactcaggcaggcatt
cgtgtcgaagctttcccggcattggtcccggacggagagcagctcaagctcgaattgttt
gatcatccaggcaaggccagggttgcgcagcgttccggcgtggtagcggcggccatgaag
cgtttgcctgatcaggtgcgggccatcgagcggttaccgggcataccggcttgtgcgttg
ctgttcaccaaggtaggaagcaagcaacaactggtcgatgatgtggtcaaggcggtgttt
tcccaggtagtggcagtggaacctctgccgcgcagccatgccgaactggagcagcgtctc
gaggacgtgcgtgcagaactggtgccattcgctgaaactctcattgctacgctcaagcaa
gcactggaagggcatctgacggtcaccaaggcgctgaagggtaatctcagcctggcgctg
gccctggtatacagtgatctcaaggcccagatgcaacgcttggtatatcccggcttcgtt
actcgagcaggggcctggctggaggcgtatccgcgctacatggaagcagctatcttgcgc
ctggaaaaagcgcccagagagcggatgcgcgaccagatgcacatgcaagtggtgcaggag
ttcgaatcgaagctggtggcgcgtcgggaagcccagcgccgcggtcagtttgaggacccg
gaattggtcgagtttggctggtggatcgaggaactgagggtatcgttgtttgctcagcaa
ctgggaaccgccatgccagtatcggagaagcgcttgcagaaacgctgggcagagttgacc
gggtga
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integrated database retrieval system
